当前解析结果
SmilChr01G004861| 统一新 Gene ID | SmilChr01G004861 |
|---|---|
| 名称 | SmilChr01G004861 |
| 描述 | disease resistance protein ADR1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66758287 - 66758840 / - |
| NCBI Gene ID | LOC131005200 |
|---|---|
| GeneID | 131005200 |
| locus_tag | - |
| NCBI Name | LOC131005200 |
| 原始查询 | SmilChr01G004861 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein ADR1-like |
| 产物 | disease resistance protein ADR1-like |
| Arabidopsis | AT3G04220 (AT3G04220)Disease resistance protein (TIR-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:819577] identity=34.6; qcov=0.806; evalue=5.14e-21; confidence=low |
| Rice | Os01g0536466 (OSJNBa0086A10.25)- identity=41.3; qcov=0.939; evalue=3.89e-26; confidence=medium |
| GO | GO:0050832 (defense response to fungus) |
| KEGG | - |
| Pfam | PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005200 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788018.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057788018.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057788018.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788018.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66758384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:66758429 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D11 |
Chr1:66758429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:66758598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,B88,C36,D6 |
Chr1:66758613 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B126,B65,B73,C25 |
Chr1:66758613 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B126,B65,B73,C25 |
Chr1:66758634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B61,B77 |
Chr1:66758733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B7,C82 |
Chr1:66758748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B36,B4,B88,C36,D6 |
Chr1:66758750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B44,B72,C26,C49 |
Chr1:66758810 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | C22 |
Chr1:66758810 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788018.1PF25019
LRR_R13L1-DRL21 73-135 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788018.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 73 | 135 | 7e-12 | 46.1 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。