当前解析结果
SmilChr01G004863| 统一新 Gene ID | SmilChr01G004863 |
|---|---|
| 名称 | SmilChr01G004863 |
| 描述 | probable sphingolipid transporter spinster homolog 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66765633 - 66772172 / + |
| NCBI Gene ID | LOC131005201 |
|---|---|
| GeneID | 131005201 |
| locus_tag | - |
| NCBI Name | LOC131005201 |
| 原始查询 | SmilChr01G004863 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable sphingolipid transporter spinster homolog 2 |
| 产物 | probable sphingolipid transporter spinster homolog 2 |
| Arabidopsis | AT2G22730 (AT2G22730)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816803] identity=64; qcov=0.911; evalue=0; confidence=high |
| Rice | Os04g0525900- identity=60; qcov=0.931; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF03137 (OATP); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005201 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057788019.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057788019.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057788019.1 |
| 4 | Secretory vesicle | Secretory vesicle | 0.40000 | XP_057788019.1 |
| 5 | Synaptic vesicle | Synaptic vesicle | 0.20000 | XP_057788019.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66766041 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B41,C11,C40,C48,C69 |
Chr1:66766618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,C11,C40,C48,C69 |
Chr1:66769040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B13 |
Chr1:66769046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:66770669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B13 |
Chr1:66770723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B52,B7,B76,B8 |
Chr1:66770745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr1:66770747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B7,B77 |
Chr1:66770760 |
ACC |
A |
2bp_deletion | frameshift_variant | 10 | B115,B17,B41,B5,B60,B90,C15,C32,C72,C79 |
Chr1:66770765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,B35,B61,C32 |
Chr1:66770943 |
C |
T |
EMS_canonical_SNV | stop_gained | 34 | A25,B1,B10,B109,B114,B130,B136,B14,B140,B21,B27,B35,B38,B39,B51,B52,B59,B61,B65,B68,B79,C15,C2,C32,C34,C45,C68,C72,C78,C8,C83,C85,D5,D6 |
Chr1:66771008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,C15,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788019.1PF07690
MFS_1 111-460 aa
PF03137
OATP 176-412 aa
PF03137
OATP 410-479 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788019.1 |
Pfam | PF07690 |
MFS_1 | Family | 111 | 460 | 2.7e-33 | 116.0 | Major Facilitator Superfamily |
XP_057788019.1 |
Pfam | PF03137 |
OATP | Family | 176 | 412 | 6.5e-28 | 98.0 | Organic Anion Transporter Polypeptide (OATP) family |
XP_057788019.1 |
Pfam | PF03137 |
OATP | Family | 410 | 479 | 6.5e-28 | 98.0 | Organic Anion Transporter Polypeptide (OATP) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。