当前解析结果
SmilChr01G004865| 统一新 Gene ID | SmilChr01G004865 |
|---|---|
| 名称 | SmilChr01G004865 |
| 描述 | probable protein S-acyltransferase 23 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66779041 - 66790422 / + |
| NCBI Gene ID | LOC131005204 |
|---|---|
| GeneID | 131005204 |
| locus_tag | - |
| NCBI Name | LOC131005204 |
| 原始查询 | SmilChr01G004865 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein S-acyltransferase 23 |
| 产物 | probable protein S-acyltransferase 23 |
| Arabidopsis | AT2G14255 (AT2G14255)Ankyrin repeat family protein with DHHC zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:2745525] identity=58.8; qcov=0.987; evalue=0; confidence=high |
| Rice | Os11g0549700- identity=62.2; qcov=0.889; evalue=0; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0005515 (protein binding); GO:0016409 (palmitoyltransferase activity); GO:0018345 (protein palmitoylation) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF01529 (DHHC); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057788022.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057788022.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057788022.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057788022.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788022.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66779259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,C79,C84 |
Chr1:66779613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:66779692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr1:66780409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,B97,C38 |
Chr1:66783426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B65,B97,C38 |
Chr1:66784958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B33,C22,C29 |
Chr1:66784989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B33,C22,C29 |
Chr1:66785021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:66785826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788022.1PF12796
Ank_2 35-125 aa
PF13606
Ank_3 61-90 aa
PF00023
Ank 61-93 aa
PF13606
Ank_3 95-121 aa
PF00023
Ank 95-125 aa
PF13637
Ank_4 99-146 aa
PF12796
Ank_2 125-191 aa
PF00023
Ank 161-188 aa
PF12796
Ank_2 187-250 aa
PF00023
Ank 195-218 aa
PF01529
DHHC 363-491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788022.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 35 | 125 | 3.9e-36 | 124.2 | Ankyrin repeats (3 copies) |
XP_057788022.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 61 | 90 | 7.6e-25 | 84.7 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF00023 |
Ank | Repeat | 61 | 93 | 1e-28 | 98.4 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 95 | 121 | 7.6e-25 | 84.7 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF00023 |
Ank | Repeat | 95 | 125 | 1e-28 | 98.4 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 99 | 146 | 1.4e-24 | 86.3 | Ankyrin repeats (many copies) |
XP_057788022.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 125 | 191 | 3.9e-36 | 124.2 | Ankyrin repeats (3 copies) |
XP_057788022.1 |
Pfam | PF00023 |
Ank | Repeat | 161 | 188 | 1e-28 | 98.4 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 187 | 250 | 3.9e-36 | 124.2 | Ankyrin repeats (3 copies) |
XP_057788022.1 |
Pfam | PF00023 |
Ank | Repeat | 195 | 218 | 1e-28 | 98.4 | Ankyrin repeat |
XP_057788022.1 |
Pfam | PF01529 |
DHHC | Family | 363 | 491 | 9.3e-34 | 117.1 | DHHC palmitoyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。