当前解析结果
SmilChr01G004878| 统一新 Gene ID | SmilChr01G004878 |
|---|---|
| 名称 | SmilChr01G004878 |
| 描述 | uncharacterized SmilChr01G004878 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66876875 - 66880339 / - |
| NCBI Gene ID | LOC131005215 |
|---|---|
| GeneID | 131005215 |
| locus_tag | - |
| NCBI Name | LOC131005215 |
| 原始查询 | SmilChr01G004878 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | neurofilament heavy protein [Source:NCBI gene (formerly Entrezgene);Acc:827408]; symbol=AT4G17000; hit=AT4G17000; species=arabidopsis; confidence=medium |
| 产物 | neurofilament heavy protein [Source:NCBI gene (formerly Entrezgene);Acc:827408]; symbol=AT4G17000; hit=AT4G17000; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G17000 (AT4G17000)neurofilament heavy protein [Source:NCBI gene (formerly Entrezgene);Acc:827408] identity=36.9; qcov=0.871; evalue=3.66e-77; confidence=medium |
| Rice | Os03g0770900- identity=40; qcov=0.41; evalue=3.92e-43; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005215 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788036.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057788036.1 |
| 3 | Spindle | Spindle | 0.80000 | XP_057788036.1 |
| 4 | Chromosome | 染色体 | 0.40000 | XP_057788036.1 |
| 5 | Spindle pole | Spindle pole | 0.40000 | XP_057788036.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66877325 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A24 |
Chr1:66877325 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A24 |
Chr1:66877396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B66,B72,C47 |
Chr1:66877697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B16,B64 |
Chr1:66878125 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,C15,C21,C8 |
Chr1:66878223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B111,B57,C50,D4 |
Chr1:66878500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:66878560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B52,B8,C84 |
Chr1:66878843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:66878934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,B74,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。