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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004899

染色体: Chr01 坐标: 67057716-67064971 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004899
名称SmilChr01G004899
描述inositol-tetrakisphosphate 1-kinase 4-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向67057716 - 67064971 / -

ID 对照

NCBI Gene IDLOC131005238
GeneID131005238
locus_tag-
NCBI NameLOC131005238
原始查询SmilChr01G004899

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述inositol-tetrakisphosphate 1-kinase 4-like
产物inositol-tetrakisphosphate 1-kinase 4-like
ArabidopsisAT4G08170 (AT4G08170)
Inositol 1,3,4-trisphosphate 5/6-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826367]
identity=66; qcov=0.991; evalue=4.44e-97; confidence=high
RiceOs03g0230500 (DSM3)
-
identity=67.8; qcov=0.986; evalue=9.23e-102; confidence=high
GOGO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0032957 (inositol trisphosphate metabolic process); GO:0047325 (inositol-3,4,5,6-tetrakisphosphate 1-kinase activity); GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity); GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
KEGGsmil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
PfamPF05770 (Ins134_P3_kin); PF17927 (Ins134_P3_kin_N)
InterPro-
eggNOG-
NRGeneID:131005238

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057788067.1
2 Cytoplasm 细胞质 0.80000 XP_057788069.1
3 Nucleus 细胞核 0.40000 XP_057788069.1
4 Chromosome 染色体 0.00000 XP_057788067.1
5 Centromere 着丝粒 0.00000 XP_057788067.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:67058737 CAG C 2bp_deletion frameshift_variant 1 C34
Chr1:67058737 CAG C 2bp_deletion CDS_variant 1 C34
Chr1:67058744 AT A 1bp_deletion frameshift_variant 1 C34
Chr1:67058744 AT A 1bp_deletion CDS_variant 1 C34
Chr1:67058747 C T EMS_canonical_SNV CDS_variant 1 C34
Chr1:67058758 CAT C 2bp_deletion frameshift_variant 30 A4,A6,A8,B108,B115,B125,B128,B131,B34,B44,B48,B50,B75,B86,B9,C12,C16,C18,C20,C39,C43,C47,C5,C65,C71,C74,C76,C8,C84,D5
Chr1:67058773 C CA 1bp_insertion frameshift_variant 27 A4,A6,B108,B125,B128,B131,B136,B34,B44,B48,B50,B75,B86,B9,C12,C16,C20,C34,C39,C43,C47,C5,C65,C74,C76,C8,C84
Chr1:67058781 GAA * 2bp_deletion CDS_variant 5 A15,B47,B58,B60,B81
Chr1:67058832 G A EMS_canonical_SNV CDS_variant 2 B108,C23
Chr1:67058845 G A EMS_canonical_SNV CDS_variant 3 B136,B16,B64
Chr1:67059709 C T EMS_canonical_SNV CDS_variant 1 C8
Chr1:67059986 C T EMS_canonical_SNV CDS_variant 1 B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788067.1
339 aa
N
1
170
339
Ins134_P3_kin_N
Ins134_P3_kin
C
PF17927 Ins134_P3_kin_N 35-114 aa PF05770 Ins134_P3_kin 135-330 aa
XP_057788068.1
336 aa
N
1
168
336
Ins134_P3_kin_N
Ins134_P3_kin
C
PF17927 Ins134_P3_kin_N 35-111 aa PF05770 Ins134_P3_kin 132-327 aa
XP_057788069.1
308 aa
N
1
154
308
Ins134_P3_kin_N
Ins134_P3_kin
C
PF17927 Ins134_P3_kin_N 35-114 aa PF05770 Ins134_P3_kin 127-299 aa
XP_057788070.1
280 aa
N
1
140
280
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 76-271 aa
XP_057788071.1
280 aa
N
1
140
280
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 76-271 aa
XP_057788072.1
280 aa
N
1
140
280
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 76-271 aa
XP_057788073.1
280 aa
N
1
140
280
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 76-271 aa
XP_057788074.1
280 aa
N
1
140
280
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 76-271 aa
XP_057788075.1
276 aa
N
1
138
276
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 72-267 aa
XP_057788076.1
258 aa
N
1
129
258
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 54-249 aa
XP_057788077.1
258 aa
N
1
129
258
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 54-249 aa
XP_057788078.1
258 aa
N
1
129
258
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 54-249 aa
XP_057788079.1
258 aa
N
1
129
258
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 54-249 aa
XP_057788080.1
255 aa
N
1
128
255
Ins134_P3_kin_N
Ins134_P3_kin
C
PF17927 Ins134_P3_kin_N 2-30 aa PF05770 Ins134_P3_kin 51-246 aa
XP_057788081.1
252 aa
N
1
126
252
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 48-243 aa
XP_057788082.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788083.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788084.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788085.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788086.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788087.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788088.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788089.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788090.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
XP_057788091.1
217 aa
N
1
108
217
Ins134_P3_kin
C
PF05770 Ins134_P3_kin 13-208 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788067.1 Pfam PF17927 Ins134_P3_kin_N Domain 35 114 9e-34 116.5 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
XP_057788067.1 Pfam PF05770 Ins134_P3_kin Domain 135 330 4.5e-83 278.4 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788068.1 Pfam PF17927 Ins134_P3_kin_N Domain 35 111 1.1e-29 103.3 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
XP_057788068.1 Pfam PF05770 Ins134_P3_kin Domain 132 327 4.3e-83 278.5 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788069.1 Pfam PF17927 Ins134_P3_kin_N Domain 35 114 7e-34 116.8 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
XP_057788069.1 Pfam PF05770 Ins134_P3_kin Domain 127 299 9.8e-73 244.7 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788070.1 Pfam PF05770 Ins134_P3_kin Domain 76 271 2.9e-83 279.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788071.1 Pfam PF05770 Ins134_P3_kin Domain 76 271 2.9e-83 279.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788072.1 Pfam PF05770 Ins134_P3_kin Domain 76 271 2.9e-83 279.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788073.1 Pfam PF05770 Ins134_P3_kin Domain 76 271 2.9e-83 279.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788074.1 Pfam PF05770 Ins134_P3_kin Domain 76 271 2.9e-83 279.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788075.1 Pfam PF05770 Ins134_P3_kin Domain 72 267 2.8e-83 279.1 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788076.1 Pfam PF05770 Ins134_P3_kin Domain 54 249 2.3e-83 279.4 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788077.1 Pfam PF05770 Ins134_P3_kin Domain 54 249 2.3e-83 279.4 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788078.1 Pfam PF05770 Ins134_P3_kin Domain 54 249 2.3e-83 279.4 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788079.1 Pfam PF05770 Ins134_P3_kin Domain 54 249 2.3e-83 279.4 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788080.1 Pfam PF17927 Ins134_P3_kin_N Domain 2 30 8.3e-06 26.8 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
XP_057788080.1 Pfam PF05770 Ins134_P3_kin Domain 51 246 2.2e-83 279.5 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788081.1 Pfam PF05770 Ins134_P3_kin Domain 48 243 2.1e-83 279.5 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788082.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788083.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788084.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788085.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788086.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788087.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788088.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788089.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788090.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
XP_057788091.1 Pfam PF05770 Ins134_P3_kin Domain 13 208 1.5e-83 280.0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

25 records

下载 cDNA FASTA
XM_057932084.1
ACAATAAACATAATCGGTGTATACATGCATTCTTCCCATGAATCTATATATTCACACACACACAATATATAGCGATTTGCACTTCACCTCTGCGCATTGATCCTGTCTTTTCGGTTATTTCAAGCCCTGTCACACTGATAGAAAAAAGTCGTAGATAAATAAAAAATTTGGTGACTTTTAAATTTTACCGACGATTGTGGTATAGAGGAAAAGGCCACTAACAAGGCGAGAAGGTTCAATTTCTTCCGACCTTCGGGAAT...
XM_057932085.1
AGCGATTTGCACTTCACCTCTGCGCATTGATCCTGTCTTTTCGGTTATTTCAAGCCCTGTCACACTGATAGAAAAAAGTCGTAGATAAATAAAAAATTTGGTGACTTTTAAATTTTACCGACGATTGTGGTATAGAGGAAAAGGCCACTAACAAGGCGAGAAGGTTCAATTTCTTCCGACCTTCGGGAATTTCGGCGTAAATTTGAAATTTTGAGTGGAGCGTTTTGTTTCTTGTTTTCTTTTTGGGTATGAAATTGAAC...

CDS

25 records

下载 CDS FASTA
LOC131005238
ATGAAATTGAACGGGACGATTCTGTATTCATGCGTGGATGATGAAAAAGAAGAGGAAGAAACGGCGGAATCGGAAACCTCGCCGCCGCCGCCGGCGAGTATTGTAGTGGGCTATGCTCTCACTTCAAAGAAAAAGAAGAGCTTTTTGAAGCCCAAGTTTATTCGCTTAGCTCGAAACAAGGGCATTCAGTTTGTTCCAATTGATCTGAGAAGAGCTTTATCAGAGCAAGGTCCATTCAATGTTGTTTTACACAAGTTAGA...
LOC131005238
ATGAAATTGAACGGGACGATTCTGTATTCATGCGTGGATGATGAAAAAGAAGAGGAAGAAACGGCGGAATCGGAAACCTCGCCGCCGCCGCCGGCGAGTATTGTAGTGGGCTATGCTCTCACTTCAAAGAAAAAGAAGAGCTTTTTGAAGCCCAAGTTTATTCGCTTAGCTCGAAACAAGGGCATTCAGTTTGTTCCAATTGATCTGAGAAGAGCTTTATCAGAGCAAGGTCCATTCAATGTTGTTTTACACAAGTTAGA...

Protein

25 records

下载 Protein FASTA
XP_057788067.1
MKLNGTILYSCVDDEKEEEETAESETSPPPPASIVVGYALTSKKKKSFLKPKFIRLARNKGIQFVPIDLRRALSEQGPFNVVLHKLEGKDWSQAIEDYQRLHPEVTVVDPPSAIQHLRNRQSMLEVVVDLKLPESYGKVCTPRQLVIPKNPTSVPDEVVKAGLTVPLVVKPLVVDGSVKSHALFLAYDHISLSELEAPMVLQEFINHSGVLFKVFIVGESIKVVRRFSLPDVTERDISRISGVFGFPRVSGADSSADDVD...
XP_057788068.1
MKLNGTILYSCVDDEKEEEETAESETSPPPPASIVVGYALTSKKKKSFLKPKFIRLARNKGIQFVPIDLRRALSEQGPFNVVLHKLEGKDWSQAIERLHPEVTVVDPPSAIQHLRNRQSMLEVVVDLKLPESYGKVCTPRQLVIPKNPTSVPDEVVKAGLTVPLVVKPLVVDGSVKSHALFLAYDHISLSELEAPMVLQEFINHSGVLFKVFIVGESIKVVRRFSLPDVTERDISRISGVFGFPRVSGADSSADDVDLDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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