Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004911`

染色体: Chr01 坐标: 67132267-67141163 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004911`
名称	SmilChr01G004911
描述	serine carboxypeptidase-like 13
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67132267 - 67141163 / `-`

ID 对照

NCBI Gene ID	`LOC131005249`
GeneID	`131005249`
locus_tag	`-`
NCBI Name	`LOC131005249`
原始查询	`SmilChr01G004911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine carboxypeptidase-like 13
产物	serine carboxypeptidase-like 13
Arabidopsis	`AT1G33540` (scpl18) serine carboxypeptidase-like 18 [Source:NCBI gene (formerly Entrezgene);Acc:840248] identity=50.3; qcov=0.968; evalue=6.12e-155; confidence=high
Rice	`Os11g0461000` (OsSCP61) - identity=48.1; qcov=1; evalue=5.19e-157; confidence=high
GO	GO:0004185 (serine-type carboxypeptidase activity); GO:0006508 (proteolysis); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0019748 (secondary metabolic process)
KEGG	-
Pfam	PF00450 (Peptidase_S10)
InterPro	-
eggNOG	-
NR	GeneID:131005249

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057788107.1`
2	Secreted	分泌到胞外	0.20000	`XP_057788108.1`
3	Nucleus	细胞核	0.00000	`XP_057788107.1`
4	Chromosome	染色体	0.00000	`XP_057788107.1`
5	Centromere	着丝粒	0.00000	`XP_057788107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67133430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr1:67133725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B87,C36
`Chr1:67133825`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B124
`Chr1:67133825`	`T`	`TG`	1bp_insertion	CDS_variant	1	B124
`Chr1:67133844`	`GT`	`G`	1bp_deletion	frameshift_variant	10	B15,B49,B51,B55,B79,C23,C4,C64,C66,C79
`Chr1:67134078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,B17
`Chr1:67134348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:67134514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:67134814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:67135053`	`C`	`CAA`	2bp_insertion	frameshift_variant	50	A13,A24,B100,B108,B118,B121,B122,B123,B125,B135,B138,B26,B32,B45,B49,B53,B54,B58,B59,B68,B69,B7,B70,B73,B75,B88,B89,B90,B92,B94,B95,C11,C13,C14,C23,C32,C41,C42,C45,C51,C52,C59,C64,C66,C68,C69,C74,C77,C9,D8
`Chr1:67135280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B66
`Chr1:67135485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788107.1

494 aa

247

494

Peptidase_S10

PF00450 Peptidase_S10 28-169 aa PF00450 Peptidase_S10 181-490 aa

XP_057788108.1

473 aa

236

473

Peptidase_S10

PF00450 Peptidase_S10 28-469 aa

XP_057788109.1

473 aa

236

473

Peptidase_S10

PF00450 Peptidase_S10 28-469 aa

XP_057788110.1

468 aa

234

468

Peptidase_S10

PF00450 Peptidase_S10 28-464 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788107.1`	Pfam	`PF00450`	Peptidase_S10	Domain	28	169	1e-120	404.7	Serine carboxypeptidase
`XP_057788107.1`	Pfam	`PF00450`	Peptidase_S10	Domain	181	490	1e-120	404.7	Serine carboxypeptidase
`XP_057788108.1`	Pfam	`PF00450`	Peptidase_S10	Domain	28	469	7.9e-129	431.4	Serine carboxypeptidase
`XP_057788109.1`	Pfam	`PF00450`	Peptidase_S10	Domain	28	469	7.9e-129	431.4	Serine carboxypeptidase
`XP_057788110.1`	Pfam	`PF00450`	Peptidase_S10	Domain	28	464	7.9e-127	424.8	Serine carboxypeptidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009095236.1
CTGGAGCACGACGACAAGAAACAAGTAGTGTCAACACCAACAATTTACACTGCTAAAAAAGGACCAATAATAATAGTCATGAATTGGTTGTTACATTTACTTGTTGCATTTCTAATCGGGATCAACTCTGCTGCTTCACAATGGATCGTCGAAAGCTTACCCGGTTACGCCGGAACTCTGCCTTTCAAACTTGAAACCGGATATATTGGAGTGGGAGAGAATGATGAAGTGCAGCTGTTTTACTACTTCATTGAGTCGGA...

XM_057932126.1
TATACACGCAATTCACGTTTCTCGCTACAGGTATGAAAAATGTGTGAGAAAAATAATACTATAACGACAGGTTTGAAAATACCTAGTATTAAACTGAAACGCGACGAGAGATGAGAAAGTGAGTGAACACTAAAATCTACACAATAAAGGAAAGAAACAATAGTAGCGGCATGAATTGGTTGTTGCGTTTACTTGTTGCATTTGTTGTCGCGATCAACTCTGCTGCTTCACAATGGATCGTCGAAAGTTTGCCCGGTTAC...

CDS

4 records

下载 CDS FASTA

LOC131005249
ATGAATTGGTTGTTGCGTTTACTTGTTGCATTTGTTGTCGCGATCAACTCTGCTGCTTCACAATGGATCGTCGAAAGTTTGCCCGGTTACGCCGGAACTCTGCCTTTCAAACTCGAAACAGGATATATTGGAGTGGGAGAGAATGATGAAGTGCAGCTGTTTTACTACTTCATTGAGTCGGAAAATGAGCCAACGAGGGATCCTCTGCTGCTCTGGCTCAACGGCGGCCCCGGTTGCTCTGCCTTCTCCGGCCTCGTTTA...

LOC131005249
ATGAATTGGTTGTTACATTTACTTGTTGCATTTCTAATCGGGATCAACTCTGCTGCTTCACAATGGATCGTCGAAAGCTTACCCGGTTACGCCGGAACTCTGCCTTTCAAACTTGAAACCGGATATATTGGAGTGGGAGAGAATGATGAAGTGCAGCTGTTTTACTACTTCATTGAGTCGGAAAATGAGCCAACGAGGGATCCTCTGCTGCTCTGGCTCAACGGCGGCCCCGGTTGCTCTGCCTTCTCCGGCCTCGTTTA...

Protein

4 records

下载 Protein FASTA

XP_057788107.1
MNWLLRLLVAFVVAINSAASQWIVESLPGYAGTLPFKLETGYIGVGENDEVQLFYYFIESENEPTRDPLLLWLNGGPGCSAFSGLVYEIGPLAFDVENFDGSLPSFILNPYSWTKVANIIFLDYPVGSGFSYSNSSTAYSSSDTKSTQHNYTFLRKVTSQMCSNNHHPFLPVSLFMFELKMQWLLAHPAFIKNNLFIAGDSYGGHIVPMLTLQIAQGNEAGLQPIMSLKGYIIGNPVTHENKDKNEVIPYAHRMALISDK...

XP_057788108.1
MNWLLHLLVAFLIGINSAASQWIVESLPGYAGTLPFKLETGYIGVGENDEVQLFYYFIESENEPTRDPLLLWLNGGPGCSAFSGLVYEIGPLAFDIENFDGSLPSFILNPYSWTKVANIIFLDYPVGTGFSYSNTSKGYASSDTKSTQHNYTFLRKWLLAHPAFIKNALYVAGDSYGGHIVPMLALQIAQGNEAGMQPIMSLKGYIIGNPVTDENKDSNEVIPYAHRMALISDEQFKLARTSCDGEYVNPDPNNVKCLFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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