Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004917`

染色体: Chr01 坐标: 67256752-67258672 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004917`
名称	SmilChr01G004917
描述	cyclin-D1-1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67256752 - 67258672 / `-`

ID 对照

NCBI Gene ID	`LOC131005258`
GeneID	`131005258`
locus_tag	`-`
NCBI Name	`LOC131005258`
原始查询	`SmilChr01G004917`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-D1-1-like
产物	cyclin-D1-1-like
Arabidopsis	`AT1G70210` (CYCD1;1) CYCLIN D1;1 [Source:NCBI gene (formerly Entrezgene);Acc:843357] identity=50.5; qcov=0.748; evalue=7.59e-55; confidence=high
Rice	`Os09g0382300` (CycD1) - identity=45.5; qcov=0.78; evalue=7.85e-50; confidence=medium
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	-
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131005258

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788119.1`
2	Chromosome	染色体	0.00000	`XP_057788119.1`
3	Centromere	着丝粒	0.00000	`XP_057788119.1`
4	Chromatin	染色质	0.00000	`XP_057788119.1`
5	Telomere	端粒	0.00000	`XP_057788119.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67257078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B52,B8,C37
`Chr1:67257265`	`AT`	`A`	1bp_deletion	frameshift_variant	77	A11,A13,A14,A18,A20,A23,A25,A7,B1,B100,B106,B11,B112,B117,B118,B119,B120,B124,B127,B131,B137,B14,B15,B25,B28,B31,B34,B42,B43,B44,B45,B50,B51,B55,B59,B6,B60,B62,B63,B7,B72,B73,B76,B77,B78,B79,B80,B81,B87,B88,B91,B93,B97,B99,C1,C12,C16,C20,C23,C26,C29,C3,C31,C4,C49,C54,C57,C6,C7,C70,C72,C79,C82,D1,D3,D7,D9
`Chr1:67257276`	`A`	`AC`	1bp_insertion	frameshift_variant	24	A25,B129,B17,B27,B54,B56,B72,B88,B89,B96,C26,C28,C34,C35,C43,C47,C5,C53,C60,C61,C67,C73,C75,D7
`Chr1:67257531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C76,C77
`Chr1:67257752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B137
`Chr1:67258260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788119.1

309 aa

154

309

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 32-160 aa PF02984 Cyclin_C 162-252 aa

XP_057788120.1

296 aa

148

296

Cyclin_N

PF00134 Cyclin_N 32-160 aa

XP_057788121.1

254 aa

127

254

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 32-160 aa PF02984 Cyclin_C 162-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788119.1`	Pfam	`PF00134`	Cyclin_N	Domain	32	160	6.4e-30	104.2	Cyclin, N-terminal domain
`XP_057788119.1`	Pfam	`PF02984`	Cyclin_C	Domain	162	252	1e-06	29.5	Cyclin, C-terminal domain
`XP_057788120.1`	Pfam	`PF00134`	Cyclin_N	Domain	32	160	5.8e-30	104.3	Cyclin, N-terminal domain
`XP_057788121.1`	Pfam	`PF00134`	Cyclin_N	Domain	32	160	4.9e-30	104.6	Cyclin, N-terminal domain
`XP_057788121.1`	Pfam	`PF02984`	Cyclin_C	Domain	162	221	5.2e-06	27.2	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932136.1
ACAAACCCTCATACCGTATATCAAACGAGTCGTGAGTATTTAGGGCACAAGAAAATGAAAAAGAATAAAGAAAAGAAAAGAATCCGAATAGGAAGGGATTATGAGGTTAGATTTGTTTGTAATCCAAGATCCTAGTAGTTCGAAAGCAGTGTCTTGGTTGAGTCTGAGAGGCCCATACATAAATGGATCTTGCCTTGCTCTCTTTCACCATCTCATTCCCATTCCCTCCCACACAATTCTCTCTCTTCACATTTCGCGCT...

XM_057932137.1
ATATCAAACGAGTCGTGAGTATTTAGGGCACAAGAAAATGAAAAAGAATAAAGAAAAGAAAAGAATCCGAATAGGAAGGGATTATGAGGTTAGATTTGTTTGTAATCCAAGATCCTAGTAGTTCGAAAGCAGTGTCTTGGTTGAGTCTGAGAGGCCCATACATAAATGGATCTTGCCTTGCTCTCTTTCACCATCTCATTCCCATTCCCTCCCACACAATTCTCTCTCTTCACATTTCGCGCTGCTACTTATTTAGAGAG...

CDS

3 records

下载 CDS FASTA

LOC131005258
ATGCCCTTCTCTCGCCGCCGCTCCTCCGCCGCCATGTCTCACCACGAATCACCCGACGGCGCCGTCAGATCCGATGAATCCACCGCTCTCATCGCCAGAATGCTGGATTCGGAGCCCCACCATATGCCCCACCCCGATTATATCCATCTCTGCCATAACCGCTCCATCCACCTCACCTCTCGCCAGGACTCCATCAATTCCATCCTCAAGGTACATGCACACTTCGAATTCAAACCGGTCACGGCTTTCCTCTCCATCAA...

Protein

3 records

下载 Protein FASTA

XP_057788119.1
MPFSRRRSSAAMSHHESPDGAVRSDESTALIARMLDSEPHHMPHPDYIHLCHNRSIHLTSRQDSINSILKVHAHFEFKPVTAFLSINYFDRFLAAHSLPETGWSFQLLSVACLSLAAKMEELHVPWLLDLQTLERTYIFEPKTIQRMELLVLATLNWRLRSVTPFDYLHHFISMLPSSAASPSFDFAVHTVASNIILNTSRVIDFMRFPPSVIAAAAAISAGGAGADLPDTLDERINREMVRSCHQLMEEYLLDTCPSSD...

XP_057788120.1
MPFSRRRSSAAMSHHESPDGAVRSDESTALIARMLDSEPHHMPHPDYIHLCHNRSIHLTSRQDSINSILKVHAHFEFKPVTAFLSINYFDRFLAAHSLPETGWSFQLLSVACLSLAAKMEELHVPWLLDLQTLERTYIFEPKTIQRMELLVLATLNWRLRSVTPFDYLHHFISMLPSSAASPSFDFAVHTVASNIILNTSRAAAAISAGGAGADLPDTLDERINREMVRSCHQLMEEYLLDTCPSSDGLKLVSAAPPSPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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