Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004924`

染色体: Chr01 坐标: 67306729-67311568 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004924`
名称	SmilChr01G004924
描述	DNA polymerase kappa
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67306729 - 67311568 / `+`

ID 对照

NCBI Gene ID	`LOC131005263`
GeneID	`131005263`
locus_tag	`-`
NCBI Name	`LOC131005263`
原始查询	`SmilChr01G004924`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA polymerase kappa
产物	DNA polymerase kappa
Arabidopsis	`AT1G49980` (AT1G49980) DNA/RNA polymerases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841422] identity=58.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0616300` (OJ1285_H07.4) - identity=50.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0003684 (damaged DNA binding); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005634 (nucleus); GO:0042276 (error-prone translesion synthesis)
KEGG	smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00817 (IMS); PF11799 (IMS_C); PF18439 (zf_UBZ)
InterPro	-
eggNOG	-
NR	GeneID:131005263

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788132.1`
2	Nuclear body	核内小体	0.80000	`XP_057788132.1`
3	Nucleoplasm	核质	0.80000	`XP_057788132.1`
4	Chromosome	染色体	0.20000	`XP_057788132.1`
5	Centromere	着丝粒	0.00000	`XP_057788132.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67308239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:67308417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B131,B49,B84,B97
`Chr1:67308422`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B42
`Chr1:67308422`	`TG`	`T`	1bp_deletion	CDS_variant	1	B42
`Chr1:67308441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr1:67308501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr1:67309251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:67310677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:67311109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B126,B71,C62
`Chr1:67311217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:67311253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,C41
`Chr1:67311379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B65,B83,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788132.1

686 aa

343

686

IMS

IMS_C

zf_UBZ

PF00817 IMS 109-261 aa PF11799 IMS_C 350-451 aa PF18439 zf_UBZ 600-633 aa

XP_057788133.1

678 aa

339

678

IMS

IMS_C

zf_UBZ

PF00817 IMS 109-253 aa PF11799 IMS_C 342-443 aa PF18439 zf_UBZ 592-625 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788132.1`	Pfam	`PF00817`	IMS	Family	109	261	1.7e-48	165.0	impB/mucB/samB family
`XP_057788132.1`	Pfam	`PF11799`	IMS_C	Domain	350	451	1.3e-18	68.2	impB/mucB/samB family C-terminal domain
`XP_057788132.1`	Pfam	`PF18439`	zf_UBZ	Domain	600	633	1.8e-07	31.4	Ubiquitin-Binding Zinc Finger
`XP_057788133.1`	Pfam	`PF00817`	IMS	Family	109	253	3.6e-49	167.2	impB/mucB/samB family
`XP_057788133.1`	Pfam	`PF11799`	IMS_C	Domain	342	443	1.3e-18	68.2	impB/mucB/samB family C-terminal domain
`XP_057788133.1`	Pfam	`PF18439`	zf_UBZ	Domain	592	625	1.8e-07	31.4	Ubiquitin-Binding Zinc Finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932149.1
TTATTTTTGAAAACCATCAATCATATTGTGAGTCGTATTCTCCACTTATTACAATATAATTAATTATCATTATAAATAGTAGTATAATTTTTTAAATGAGATCATGACTATTTTTTTATGGAGGGACGGAGTGTTTCCTTACCAAAAGAAAAAGATAAAGAAAAAGAAATTGGTGCCCTCTAGCACTAGATTATTTATATTTGGCGCCTCTCTCCACTTTGTTTTTTTGTAAATTTTTGCCCTCCATCTCTCGGTTTTCA...

XM_057932150.1
TTATTTTTGAAAACCATCAATCATATTGTGAGTCGTATTCTCCACTTATTACAATATAATTAATTATCATTATAAATAGTAGTATAATTTTTTAAATGAGATCATGACTATTTTTTTATGGAGGGACGGAGTGTTTCCTTACCAAAAGAAAAAGATAAAGAAAAAGAAATTGGTGCCCTCTAGCACTAGATTATTTATATTTGGCGCCTCTCTCCACTTTGTTTTTTTGTAAATTTTTGCCCTCCATCTCTCGGTTTTCA...

CDS

2 records

下载 CDS FASTA

LOC131005263
ATGACAGAAATTGAAAAGTCAAATTCCGGGAATGATTCGGCTCGGCCATGGCAAACCTACAACACTGTTTATACTACCGCAAAAGCAGGGATGGAAGGGGTGGACAAGGAAAAAGTGCAGAGGGTAGTATATGAGATGAGCAAGGGGTCCAAGTATTTTGAACACGAGGAAAAGAAAGAAGCTTACATGAAGCAGAAAATCGAGAGTTTTCGGGCGCAGCTTGCAAAGCTTACGGACTCAGATGTATCACACCATCAGAA...

Protein

2 records

下载 Protein FASTA

XP_057788132.1
MTEIEKSNSGNDSARPWQTYNTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFEHEEKKEAYMKQKIESFRAQLAKLTDSDVSHHQKIADRKIAELEATRDLSRIWLHVDMDAFYAAVETLSNPSLEGKPMAVGSMSMLSTANYEARKFGVRAAMPGFIARKLCPELIFVPIDFKKYTHISGLTRKVFHRYDPNFLAASLDEAYLDITNFCNDKGMTGAQFLVIMFPKVAEELRECIHEETGLTCSAGVAPNRLLAKVCS...

XP_057788133.1
MTEIEKSNSGNDSARPWQTYNTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFEHEEKKEAYMKQKIESFRAQLAKLTDSDVSHHQKIADRKIAELEATRDLSRIWLHVDMDAFYAAVETLSNPSLEGKPMAVGSMSMLSTANYEARKFGVRAAMPGFIARKLCPELIFVPIDFKKYTHISGLTRKVFHRYDPNFLAASLDEAYLDITNFCNDKGMTGAQVAEELRECIHEETGLTCSAGVAPNRLLAKVCSDINKPNGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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