Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004943`

染色体: Chr01 坐标: 67544619-67546930 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004943`
名称	SmilChr01G004943
描述	uncharacterized SmilChr01G004943
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67544619 - 67546930 / `+`

ID 对照

NCBI Gene ID	`LOC131005281`
GeneID	`131005281`
locus_tag	`-`
NCBI Name	`LOC131005281`
原始查询	`SmilChr01G004943`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974]; symbol=AT2G14850; hit=AT2G14850; species=arabidopsis; confidence=high
产物	transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974]; symbol=AT2G14850; hit=AT2G14850; species=arabidopsis; confidence=high
Arabidopsis	`AT2G14850` (AT2G14850) transcriptional regulator of RNA polII, SAGA, subunit [Source:NCBI gene (formerly Entrezgene);Acc:815974] identity=48.8; qcov=1; evalue=3.8e-98; confidence=high
Rice	`Os12g0580500` - identity=34.5; qcov=1.02; evalue=1.46e-47; confidence=low
GO	GO:0000124 (SAGA complex); GO:0003713 (transcription coactivator activity); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF12767 (SAGA-Tad1)
InterPro	-
eggNOG	-
NR	GeneID:131005281

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788161.1`
2	Chromosome	染色体	0.20000	`XP_057788161.1`
3	Centromere	着丝粒	0.00000	`XP_057788161.1`
4	Chromatin	染色质	0.00000	`XP_057788161.1`
5	Telomere	端粒	0.00000	`XP_057788161.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67545740`	`AC`	`A`	1bp_deletion	frameshift_variant	97	A15,A16,A2,A20,A22,A7,B101,B105,B107,B109,B110,B111,B112,B115,B12,B122,B124,B129,B131,B134,B138,B139,B14,B21,B23,B29,B3,B32,B33,B34,B36,B37,B38,B39,B4,B42,B46,B47,B49,B5,B50,B52,B54,B59,B61,B65,B66,B67,B69,B7,B70,B79,B8,B80,B85,B87,B90,B92,B93,B97,B99,C1,C10,C13,C15,C17,C23,C26,C34,C35,C36,C37,C38,C39,C40,C42,C44,C48,C50,C51,C54,C58,C6,C60,C66,C68,C69,C73,C75,C78,C81,C82,C84,C87,D10,D2,D8
`Chr1:67545782`	`C`	`T`	EMS_canonical_SNV	stop_gained	75	A14,A16,A2,A20,A7,B101,B107,B109,B110,B111,B112,B115,B122,B124,B129,B131,B133,B134,B139,B14,B19,B21,B29,B3,B32,B34,B37,B38,B39,B42,B46,B47,B5,B50,B52,B54,B59,B61,B65,B67,B69,B70,B79,B8,B87,B89,B97,B99,C1,C10,C15,C17,C23,C26,C34,C35,C36,C38,C40,C42,C44,C48,C50,C54,C58,C6,C60,C63,C66,C68,C81,C82,C84,D10,D8
`Chr1:67545824`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	A2,B115,B52,C54
`Chr1:67545824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B115,B52,C54
`Chr1:67545863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:67546073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,B38
`Chr1:67546114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr1:67546115`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	D3
`Chr1:67546115`	`G`	`GAA`	2bp_insertion	CDS_variant	1	D3
`Chr1:67546264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr1:67546351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,B90,B92
`Chr1:67546393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788161.1

332 aa

166

332

SAGA-Tad1

PF12767 SAGA-Tad1 5-276 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788161.1`	Pfam	`PF12767`	SAGA-Tad1	Family	5	276	6.4e-55	187.3	Transcriptional regulator of RNA polII, SAGA, subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932178.1
CATGAAAATATGTTGTGCGAAAACTTTAGCGCCATTAGGCGCCTTGAGTTCCAATTTTTTTTTTTTTTTGCTTTTTGCTAAAAGGTGAGAACCAAACACGGCCTTAAATTCCATAAAACAAGAGCAGTAGTATACGATTATGTTAGAAGTGGCCAAGCCTTATAAGTTGTTCCGTGTTTGGCTTTGCTCTGTCCCTAAAGTTGGATTTTGACGAACAGAATTAAACTCCAGAAAATTAGACTTGGGCCGCCGATCAAACA...

CDS

1 records

下载 CDS FASTA

LOC131005281
ATGGTGGCGAATTTTACTCGTGTGGACACGCTAGAGCTGAAAGATCTTATCTATCAAAGGATTGGACACCAAAGAGCAGATAAGTACTTTGATCAGCTGAAGAGGTTTCTAAGTTTGAAGCTTAGTAAAGTCGAGTTTGATAGGAGCTGCTTACAGACGATTGGAAGGGAGAACGTTTCTCTTCACAATAGGCTTATCCGATCCATTGCCCAAAACGCGTGCCAAGCTAGGATCCCACCTCAAAAGGCTCGAAAAATTGA...

Protein

1 records

下载 Protein FASTA

XP_057788161.1
MVANFTRVDTLELKDLIYQRIGHQRADKYFDQLKRFLSLKLSKVEFDRSCLQTIGRENVSLHNRLIRSIAQNACQARIPPQKARKIEGLSVKVANGYQRNCLQSLYGDAFPQSPRKCRSPVSRDRKLRDRPSPLGPLGKSPSFTCEETVTRTQEQQSGTELHSLCSRPPVDVVSVEDGEEVEQRAADVGRWWSPVTAPFGVSIGAREAAPCSYKDDACIAEACENRGELPDTLSLRRRLQKKLASEGVGISLECADVINN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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