当前解析结果
SmilChr01G004946| 统一新 Gene ID | SmilChr01G004946 |
|---|---|
| 名称 | SmilChr01G004946 |
| 描述 | uncharacterized SmilChr01G004946 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67555120 - 67558636 / - |
| NCBI Gene ID | LOC131005284 |
|---|---|
| GeneID | 131005284 |
| locus_tag | - |
| NCBI Name | LOC131005284 |
| 原始查询 | SmilChr01G004946 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-2 heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841410]; symbol=AT1G49870; hit=AT1G49870; species=arabidopsis; confidence=medium |
| 产物 | myosin-2 heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841410]; symbol=AT1G49870; hit=AT1G49870; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G49870 (AT1G49870)myosin-2 heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841410] identity=39.4; qcov=1.2; evalue=1.39e-154; confidence=medium |
| Rice | Os03g0604600- identity=49; qcov=0.61; evalue=6.55e-111; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005284 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057788164.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057788164.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057788164.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057788164.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788164.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67555317 |
AC |
A |
1bp_deletion | frameshift_variant | 26 | A22,B122,B124,B13,B140,B26,B32,B37,B4,B54,B58,B59,B63,B75,C15,C21,C25,C33,C36,C41,C51,C64,C66,C85,C9,D5 |
Chr1:67555522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B44,B49,C22,C64,C66 |
Chr1:67555534 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B25 |
Chr1:67555534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr1:67556220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:67556235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr1:67556486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:67556649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:67556734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr1:67556803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:67556813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D11,D6 |
Chr1:67556896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。