当前解析结果
SmilChr01G004961| 统一新 Gene ID | SmilChr01G004961 |
|---|---|
| 名称 | SmilChr01G004961 |
| 描述 | pumilio homolog 12-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67695315 - 67697559 / - |
| NCBI Gene ID | LOC131005300 |
|---|---|
| GeneID | 131005300 |
| locus_tag | - |
| NCBI Name | LOC131005300 |
| 原始查询 | SmilChr01G004961 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pumilio homolog 12-like |
| 产物 | pumilio homolog 12-like |
| Arabidopsis | AT5G56510 (PUM12)pumilio 12 [Source:NCBI gene (formerly Entrezgene);Acc:835752] identity=43; qcov=0.599; evalue=1.66e-85; confidence=medium |
| Rice | Os12g0493900- identity=41.8; qcov=0.585; evalue=2.6e-79; confidence=medium |
| GO | GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0010608 (post-transcriptional regulation of gene expression) |
| KEGG | - |
| Pfam | PF00806 (PUF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788182.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057788182.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057788182.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057788182.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788182.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67695579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr1:67696019 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,C31,C54 |
Chr1:67696136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:67696613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B20,C85 |
Chr1:67696844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B103,C15,C21 |
Chr1:67696911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr1:67696953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C82 |
Chr1:67697006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr1:67697141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:67697288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B112,B13,B2,B52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788182.1PF00806
PUF 224-256 aa
PF00806
PUF 259-292 aa
PF00806
PUF 299-331 aa
PF00806
PUF 339-368 aa
PF00806
PUF 371-405 aa
PF00806
PUF 408-425 aa
PF00806
PUF 443-462 aa
PF00806
PUF 484-514 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 224 | 256 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 259 | 292 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 299 | 331 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 339 | 368 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 371 | 405 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 408 | 425 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 443 | 462 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
XP_057788182.1 |
Pfam | PF00806 |
PUF | Repeat | 484 | 514 | 5.2e-59 | 195.9 | Pumilio-family RNA binding repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。