当前解析结果
SmilChr01G004977| 统一新 Gene ID | SmilChr01G004977 |
|---|---|
| 名称 | SmilChr01G004977 |
| 描述 | uncharacterized SmilChr01G004977 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67836136 - 67837071 / + |
| NCBI Gene ID | LOC131005313 |
|---|---|
| GeneID | 131005313 |
| locus_tag | - |
| NCBI Name | LOC131005313 |
| 原始查询 | SmilChr01G004977 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011]; symbol=AT2G15220; hit=AT2G15220; species=arabidopsis; confidence=high |
| 产物 | Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011]; symbol=AT2G15220; hit=AT2G15220; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G15220 (AT2G15220)Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011] identity=59.7; qcov=0.978; evalue=2.11e-95; confidence=high |
| Rice | Os10g0490900- identity=59.2; qcov=0.845; evalue=7.28e-73; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04450 (BSP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005313 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.80000 | XP_057788198.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057788198.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057788198.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788198.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67836397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:67836441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr1:67836627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,B4,B95,C36 |
Chr1:67836635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B36,C53 |
Chr1:67836727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C1,C26,C43 |
Chr1:67836754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788198.1PF04450
BSP 23-222 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788198.1 |
Pfam | PF04450 |
BSP | Family | 23 | 222 | 7.5e-78 | 261.8 | Peptidase of plants and bacteria |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。