Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004985`

染色体: Chr01 坐标: 67897017-67903266 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004985`
名称	SmilChr01G004985
描述	tubulin-folding cofactor B
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67897017 - 67903266 / `-`

ID 对照

NCBI Gene ID	`LOC131005320`
GeneID	`131005320`
locus_tag	`-`
NCBI Name	`LOC131005320`
原始查询	`SmilChr01G004985`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tubulin-folding cofactor B
产物	tubulin-folding cofactor B
Arabidopsis	`AT3G10220` (EMB2804) tubulin folding cofactor B [Source:NCBI gene (formerly Entrezgene);Acc:820184] identity=72.2; qcov=1; evalue=6.47e-132; confidence=high
Rice	`Os04g0692100` - identity=66.5; qcov=1; evalue=9.78e-119; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0007021 (tubulin complex assembly); GO:0007023 (post-chaperonin tubulin folding pathway); GO:0031122 (cytoplasmic microtubule organization); GO:0035371 (microtubule plus-end); GO:0043014 (alpha-tubulin binding); GO:0051010 (microtubule plus-end binding)
KEGG	-
Pfam	PF01302 (CAP_GLY); PF14560 (Ubiquitin_2)
InterPro	-
eggNOG	-
NR	GeneID:131005320

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788212.1`
2	Cytosol	细胞质基质	1.00000	`XP_057788212.1`
3	Nucleus	细胞核	0.20000	`XP_057788212.1`
4	Nuclear body	核内小体	0.20000	`XP_057788212.1`
5	Nucleoplasm	核质	0.20000	`XP_057788212.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67899554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr1:67899565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B60,C31,C4,C48
`Chr1:67899566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:67900471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B23,C39
`Chr1:67901255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr1:67901309`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:67901320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:67901960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788212.1

241 aa

120

241

Ubiquitin_2

CAP_GLY

PF14560 Ubiquitin_2 13-97 aa PF01302 CAP_GLY 159-225 aa

XP_057788213.1

241 aa

120

241

Ubiquitin_2

CAP_GLY

PF14560 Ubiquitin_2 13-97 aa PF01302 CAP_GLY 159-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788212.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	13	97	4.7e-29	101.4	Ubiquitin-like domain
`XP_057788212.1`	Pfam	`PF01302`	CAP_GLY	Domain	159	225	5.1e-25	87.9	CAP-Gly domain
`XP_057788213.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	13	97	4.7e-29	101.4	Ubiquitin-like domain
`XP_057788213.1`	Pfam	`PF01302`	CAP_GLY	Domain	159	225	5.1e-25	87.9	CAP-Gly domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932229.1
CAAAAAAAAGAAAAGTAAATAAATTTAAAATGGACTAGTGGAGAGTATTAAATTTTGGATACCCCGCGACGATCGAGTCTGAGAATCAGGCATCTTTGTCCTCTCACAAGAGCTTGGCGCTTGCTTCATCCGCTGCAGGACGCATAAGCTAAGCGAGCGCTGAAGGATATGGCTAGTAAGTTACAAGTTCAAGGAGATGAGTCGGTTCTTTTACGTGTCACTCACTCCAACATCAAGAGTTTTGCTTCTGATGTTCGGTT...

XM_057932230.1
AATCAGGCATCTTTGTCCTCTCACAAGAGCTTGGCGCTTGCTTCATCCGCTGCAGATTTCGAATCCGAATGCGTTATTCCCACTTACTTATGAACTAGGACGCATAAGCTAAGCGAGCGCTGAAGGATATGGCTAGTAAGTTACAAGTTCAAGGAGATGAGTCGGTTCTTTTACGTGTCACTCACTCCAACATCAAGAGTTTTGCTTCTGATGTTCGGTTCTCTCTGCAGATGACAGTAGAAGCTGTAAAAGATAAGCTA...

CDS

2 records

下载 CDS FASTA

LOC131005320
ATGGCTAGTAAGTTACAAGTTCAAGGAGATGAGTCGGTTCTTTTACGTGTCACTCACTCCAACATCAAGAGTTTTGCTTCTGATGTTCGGTTCTCTCTGCAGATGACAGTAGAAGCTGTAAAAGATAAGCTATGGAAAAAGTGTGGCACTTCTGTTGAGTCAATGTGCCTCGAGCTTTATGATGATACGGGTGCTAAAGTTTCAGATCTAGCTGATAACACAAGACCCTTTGGTTTCTATTCTCCACAAGATGGTTTCCG...

Protein

2 records

下载 Protein FASTA

XP_057788212.1
MASKLQVQGDESVLLRVTHSNIKSFASDVRFSLQMTVEAVKDKLWKKCGTSVESMCLELYDDTGAKVSDLADNTRPFGFYSPQDGFRLHVVDLDPSSVTSGGWLEDTSLVEKYKISDEAYNKLDGTYKKFKEKMGPQHSNLESRIPDNYMEDLCANIKVGDRCQVEPGEKRGTVKFVGQAETLPPGFWVGIQYDEPLGKNDGMVKGKRYFQCPPLCGAMVRPDKVKVGDYPERDPFEEDEI

XP_057788213.1
MASKLQVQGDESVLLRVTHSNIKSFASDVRFSLQMTVEAVKDKLWKKCGTSVESMCLELYDDTGAKVSDLADNTRPFGFYSPQDGFRLHVVDLDPSSVTSGGWLEDTSLVEKYKISDEAYNKLDGTYKKFKEKMGPQHSNLESRIPDNYMEDLCANIKVGDRCQVEPGEKRGTVKFVGQAETLPPGFWVGIQYDEPLGKNDGMVKGKRYFQCPPLCGAMVRPDKVKVGDYPERDPFEEDEI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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