当前解析结果
SmilChr01G004991| 统一新 Gene ID | SmilChr01G004991 |
|---|---|
| 名称 | SmilChr01G004991 |
| 描述 | receptor protein kinase-like protein At4g34220 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 67939835 - 67943482 / + |
| NCBI Gene ID | LOC131005321 |
|---|---|
| GeneID | 131005321 |
| locus_tag | - |
| NCBI Name | LOC131005321 |
| 原始查询 | SmilChr01G004991 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor protein kinase-like protein At4g34220 |
| 产物 | receptor protein kinase-like protein At4g34220 |
| Arabidopsis | AT4G34220 (AT4G34220)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829571] identity=48.2; qcov=1.04; evalue=0; confidence=high |
| Rice | Os06g0638500 (P0523F01.24)- identity=40.9; qcov=1.12; evalue=0; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005321 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788214.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788214.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788214.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788214.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788214.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:67940418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:67940441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,C27,C52,C77 |
Chr1:67940488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:67940489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B53,B67,C72 |
Chr1:67940539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,C27,C52,C77 |
Chr1:67940569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C86 |
Chr1:67940720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr1:67940725 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr1:67940785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:67940836 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B23,C39 |
Chr1:67940983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:67941119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788214.1PF08263
LRRNT_2 21-60 aa
PF13855
LRR_8 74-133 aa
PF00560
LRR_1 98-119 aa
PF00560
LRR_1 122-139 aa
PF00560
LRR_1 190-210 aa
PF00560
LRR_1 214-233 aa
PF07714
PK_Tyr_Ser-Thr 464-609 aa
PF00069
Pkinase 464-753 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788214.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 21 | 60 | 1.5e-10 | 41.9 | Leucine rich repeat N-terminal domain |
XP_057788214.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 74 | 133 | 6.8e-14 | 52.1 | Leucine rich repeat |
XP_057788214.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 98 | 119 | 6.2e-22 | 73.7 | Leucine Rich Repeat |
XP_057788214.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 122 | 139 | 6.2e-22 | 73.7 | Leucine Rich Repeat |
XP_057788214.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 190 | 210 | 6.2e-22 | 73.7 | Leucine Rich Repeat |
XP_057788214.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 214 | 233 | 6.2e-22 | 73.7 | Leucine Rich Repeat |
XP_057788214.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 464 | 609 | 2.3e-24 | 86.8 | Protein tyrosine and serine/threonine kinase |
XP_057788214.1 |
Pfam | PF00069 |
Pkinase | Domain | 464 | 753 | 1.2e-25 | 91.1 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。