Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004995`

染色体: Chr01 坐标: 67990440-67994886 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004995`
名称	SmilChr01G004995
描述	MADS-box transcription factor 6-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67990440 - 67994886 / `-`

ID 对照

NCBI Gene ID	`LOC131005328`
GeneID	`131005328`
locus_tag	`-`
NCBI Name	`LOC131005328`
原始查询	`SmilChr01G004995`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MADS-box transcription factor 6-like
产物	MADS-box transcription factor 6-like
Arabidopsis	`AT4G09960` (STK) K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:826586] identity=52.7; qcov=0.898; evalue=2.87e-45; confidence=medium
Rice	`Os02g0682200` (MFO1) - identity=53.9; qcov=0.844; evalue=1.4e-46; confidence=medium
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131005328

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788221.1`
2	Chromosome	染色体	0.00000	`XP_057788221.1`
3	Centromere	着丝粒	0.00000	`XP_057788221.1`
4	Chromatin	染色质	0.00000	`XP_057788221.1`
5	Telomere	端粒	0.00000	`XP_057788221.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67991732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr1:67994478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B2,B40,C68,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788221.1

197 aa

197

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-170 aa

XP_057788222.1

195 aa

195

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-170 aa

XP_057788223.1

183 aa

183

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-162 aa

XP_057788224.1

181 aa

181

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-162 aa

XP_057788225.1

181 aa

181

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-162 aa

XP_057788226.1

169 aa

169

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-167 aa

XP_057788227.1

167 aa

167

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 85-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788221.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	5.1e-28	97.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788221.1`	Pfam	`PF01486`	K-box	Family	85	170	2.5e-26	92.4	K-box region
`XP_057788222.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.3e-28	98.1	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788222.1`	Pfam	`PF01486`	K-box	Family	85	170	3.6e-26	91.8	K-box region
`XP_057788223.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	5.5e-28	96.9	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788223.1`	Pfam	`PF01486`	K-box	Family	85	162	2.3e-18	66.9	K-box region
`XP_057788224.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	1.5e-28	98.7	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788224.1`	Pfam	`PF01486`	K-box	Family	85	162	2.1e-22	79.8	K-box region
`XP_057788225.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	2.3e-28	98.1	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788225.1`	Pfam	`PF01486`	K-box	Family	85	162	3.6e-19	69.4	K-box region
`XP_057788226.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	4.9e-28	97.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788226.1`	Pfam	`PF01486`	K-box	Family	85	167	3.4e-17	63.1	K-box region
`XP_057788227.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	5e-28	97.0	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057788227.1`	Pfam	`PF01486`	K-box	Family	85	146	1.4e-16	61.1	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057932243.1
CAAAGATGATGATATCATATCAAAACTATTCCCTCTCTCTCTCTCTCTCTCTGCATCCCTGGCTATATAAGCTGCATGGGACTACAACATCATGTGTAGTTTGGAATAGTTGATGATCTTTTCTTTTGAACATGCTCTGTCTTTGCTTTGTCTTTTCTTTAGCCTCCCAACTCAATCACATTATTAATATTCTCATCACTTCTCCTCAAACATCAGCTCCCACAGTTTCAGTGAAAGAGAATTAATGGGGAGAGGGAAAG...

XM_057932242.1
TCTCTCTCTCTCTCTGCATCCCTGGCTATATAAGCTGCATGGGACTACAACATCATGTGTAGTTTGGAATAGTTGATGATCTTTTCTTTTGAACATGCTCTGTCTTTGCTTTGTCTTTTCTTTAGCCTCCCAACTCAATCACATTATTAATATTCTCATCACTTCTCCTCAAACATCAGCTCCCACAGTTTCAGTGAAAGAGAATTAATGGGGAGAGGGAAAGTGGAGCTGAAGAGGATAGAGAATCCCACAAACAGGCA...

CDS

7 records

下载 CDS FASTA

LOC131005328
ATGGGGAGAGGGAAAGTGGAGCTGAAGAGGATAGAGAATCCCACAAACAGGCAGGTGACATTCTCGAAGAGGAGAAATGGTCTGTTGAAGAAAGCTTTCGAGCTTTCGGTGCTCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCCCCTTCGGGAAAGGCATACCAGTTTTCCAGTCATGAGATAACAAGGACAATTACAAGGTACAAAATTGAATTAGGAATAGCCAAAGCAGACGACCAAGGCTTCACATCCATGGA...

Protein

7 records

下载 Protein FASTA

XP_057788221.1
MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPSGKAYQFSSHEITRTITRYKIELGIAKADDQGFTSMEVWRNEIEDLSRTIEALEARERNFAGENLSGLGMKELKQLERQLRVGVERIRSKKRRIIMEHINYLKKKHKDLQEENTNLQKKVKLHELEEASTSSIILGSDSARLFQRIE

XP_057788222.1
MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPSGKAYQFSSHEITRTITRYKIELGIAKADDQGFTSMEVWRNEIEDLSRTIEALEARERNFAGENLSGLGMKELKQLERQLRVGVERIRSKKRRIIMEHINYLKKKHKDLQEENTNLQKKLHELEEASTSSIILGSDSARLFQRIE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器