Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004997`

染色体: Chr01 坐标: 68014003-68018686 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004997`
名称	SmilChr01G004997
描述	CBS domain-containing protein CBSCBSPB5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68014003 - 68018686 / `+`

ID 对照

NCBI Gene ID	`LOC131005333`
GeneID	`131005333`
locus_tag	`-`
NCBI Name	`LOC131005333`
原始查询	`SmilChr01G004997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CBS domain-containing protein CBSCBSPB5-like
产物	CBS domain-containing protein CBSCBSPB5-like
Arabidopsis	`AT5G50640` (AT5G50640) CBS/octicosapeptide/phox/Bemp1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:835133] identity=69.1; qcov=0.847; evalue=0; confidence=high
Rice	`Os11g0170300` (OsCBSCBSPB2) - identity=51.3; qcov=0.946; evalue=3.71e-179; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00564 (PB1); PF00571 (CBS)
InterPro	-
eggNOG	-
NR	GeneID:131005333

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057788231.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057788231.1`
3	Trans-golgi network	Trans-golgi network	0.20000	`XP_057788231.1`
4	Vacuole	液泡	0.20000	`XP_057788231.1`
5	Vacuole membrane	液泡膜	0.20000	`XP_057788231.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68015701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:68015884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C17,C21,D11
`Chr1:68016074`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B57,B90,B92,C28
`Chr1:68016297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,C6,C7,C9
`Chr1:68017628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B129,B54,C47
`Chr1:68017784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:68017792`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C39
`Chr1:68017792`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C39
`Chr1:68018335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788231.1

556 aa

278

556

CBS

PB1

PF00571 CBS 77-123 aa PF00571 CBS 137-182 aa PF00571 CBS 245-293 aa PF00571 CBS 305-347 aa PF00564 PB1 424-506 aa

XP_057788232.1

554 aa

277

554

CBS

PB1

PF00571 CBS 75-121 aa PF00571 CBS 135-180 aa PF00571 CBS 243-291 aa PF00571 CBS 303-345 aa PF00564 PB1 422-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788231.1`	Pfam	`PF00571`	CBS	Domain	77	123	5.1e-34	117.1	CBS domain
`XP_057788231.1`	Pfam	`PF00571`	CBS	Domain	137	182	5.1e-34	117.1	CBS domain
`XP_057788231.1`	Pfam	`PF00571`	CBS	Domain	245	293	5.1e-34	117.1	CBS domain
`XP_057788231.1`	Pfam	`PF00571`	CBS	Domain	305	347	5.1e-34	117.1	CBS domain
`XP_057788231.1`	Pfam	`PF00564`	PB1	Domain	424	506	1.5e-16	60.8	PB1 domain
`XP_057788232.1`	Pfam	`PF00571`	CBS	Domain	75	121	5e-34	117.1	CBS domain
`XP_057788232.1`	Pfam	`PF00571`	CBS	Domain	135	180	5e-34	117.1	CBS domain
`XP_057788232.1`	Pfam	`PF00571`	CBS	Domain	243	291	5e-34	117.1	CBS domain
`XP_057788232.1`	Pfam	`PF00571`	CBS	Domain	303	345	5e-34	117.1	CBS domain
`XP_057788232.1`	Pfam	`PF00564`	PB1	Domain	422	504	1.5e-16	60.8	PB1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932248.1
TACGAAAAAGAAATCTTCTCCTTTCATGCATCATCATGAAACAATTCCCAACAAACTAAACAACCAAACTAATTCCCAGAAACAATAAACAAAACCAAAAAAATAAAAATAAAAATAAAAGAAAGAAAAAGAAAAATAATTTCCATCATCAAGCCTGCCTCTTTGGCTCGTAGCAATCGCCATTTTCACGGTTAATACACCTTGCTCACGCCTGGAGGAGGTGAGTTATTGTTAATCGTAAGTGATGACGAGTCAAGGGG...

XM_057932249.1
ACGAAAAAGAAATCTTCTCCTTTCATGCATCATCATGAAACAATTCCCAACAAACTAAACAACCAAACTAATTCCCAGAAACAATAAACAAAACCAAAAAAATAAAAATAAAAATAAAAGAAAGAAAAAGAAAAATAATTTCCATCATCAAGCCTGCCTCTTTGGCTCGTAGCAATCGCCATTTTCACGGTTAATACACCTTGCTCACGCCTGGAGGAGGTGAGTTATTGTTAATCGTAAGTGATGACGAGTCAAGGGGG...

CDS

2 records

下载 CDS FASTA

LOC131005333
ATGACGAGTCAAGGGGGATTATCATCGTCGACGAAGAGAAGCTTGTCATCGTTGATTATGCATTCGCCGTCTCAGGGCAGGAAGAAATCCGCCGCCGCCTCCGAAGGCGGCGGAGCTTTCTTGGGCTCTCCCTCTCACCGCAAATCGCAATCTCTGTCTCTCTCCACTCCCCGCTCCATCAACAGGGCATTGTCAGGGGAGAGAACGGTGAAGAGACTGCGTCTGTCTCGAGCCGTGACAGTACCTGAAACAACGAGTAT...

LOC131005333
ATGACGAGTCAAGGGGGATTATCATCGTCGACGAAGAGAAGCTTGTCATCGTTGATTATGCATTCGCCGTCTCAGGGCAGGAAGAAATCCGCCGCCGCCTCCGAAGGCGGCGGAGCTTTCTTGGGCTCTCCCTCTCACCGCAAATCGCAATCTCTGTCTCTCTCCACTCCCCGCTCCATGGCATTGTCAGGGGAGAGAACGGTGAAGAGACTGCGTCTGTCTCGAGCCGTGACAGTACCTGAAACAACGAGTATCAAAGA...

Protein

2 records

下载 Protein FASTA

XP_057788231.1
MTSQGGLSSSTKRSLSSLIMHSPSQGRKKSAAASEGGGAFLGSPSHRKSQSLSLSTPRSINRALSGERTVKRLRLSRAVTVPETTSIKEACQRMAARRVDALLLTDSNALLCGILTDKDIATRVIARELNMDETPASKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAIARLERAAEKGKAIAAAVEGVEKQWGTSASGPGPNTFVETLRERFKPSLSTIISENTKIATVDQTDTVVAA...

XP_057788232.1
MTSQGGLSSSTKRSLSSLIMHSPSQGRKKSAAASEGGGAFLGSPSHRKSQSLSLSTPRSMALSGERTVKRLRLSRAVTVPETTSIKEACQRMAARRVDALLLTDSNALLCGILTDKDIATRVIARELNMDETPASKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAIARLERAAEKGKAIAAAVEGVEKQWGTSASGPGPNTFVETLRERFKPSLSTIISENTKIATVDQTDTVVAAAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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