Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004998`

染色体: Chr01 坐标: 68020928-68023989 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004998`
名称	SmilChr01G004998
描述	non-specific phospholipase C6-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68020928 - 68023989 / `+`

ID 对照

NCBI Gene ID	`LOC131005334`
GeneID	`131005334`
locus_tag	`-`
NCBI Name	`LOC131005334`
原始查询	`SmilChr01G004998`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	non-specific phospholipase C6-like
产物	non-specific phospholipase C6-like
Arabidopsis	`AT3G48610` (NPC6) non-specific phospholipase C6 [Source:NCBI gene (formerly Entrezgene);Acc:824021] identity=71.7; qcov=0.988; evalue=0; confidence=high
Rice	`Os01g0955000` (OsNPC2) - identity=60.2; qcov=0.966; evalue=0; confidence=high
GO	GO:0009395 (phospholipid catabolic process); GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04185 (Phosphoesterase)
InterPro	-
eggNOG	-
NR	GeneID:131005334

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057788233.1`
2	Nucleus	细胞核	0.00000	`XP_057788233.1`
3	Chromosome	染色体	0.00000	`XP_057788233.1`
4	Centromere	着丝粒	0.00000	`XP_057788233.1`
5	Chromatin	染色质	0.00000	`XP_057788233.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68021234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,D3
`Chr1:68021307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B38,B52,B55,C8
`Chr1:68021333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:68021607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:68021750`	`CAG`	`C`	2bp_deletion	frameshift_variant	3	C2,C32,C68
`Chr1:68021750`	`CAG`	`C`	2bp_deletion	CDS_variant	3	C2,C32,C68
`Chr1:68023222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr1:68023308`	`T`	`TC`	1bp_insertion	frameshift_variant	19	A24,A3,B134,B139,B18,B22,B43,B59,B73,B83,B91,B99,C20,C23,C34,C54,C71,D3,D8
`Chr1:68023485`	`G`	`GC`	1bp_insertion	frameshift_variant	49	A1,A25,A7,A9,B108,B110,B112,B117,B12,B120,B123,B124,B126,B2,B24,B26,B28,B31,B41,B49,B5,B51,B52,B55,B6,B66,B68,B72,B76,B80,B85,C11,C14,C15,C2,C32,C33,C43,C50,C64,C66,C67,C68,C69,C70,C76,C8,C80,D7
`Chr1:68023562`	`G`	`GT`	1bp_insertion	frameshift_variant	7	A10,B139,B32,B54,B71,C5,C65
`Chr1:68023567`	`C`	`CAA`	2bp_insertion	frameshift_variant	34	A1,A14,A3,B104,B121,B134,B135,B137,B15,B20,B31,B4,B43,B46,B73,B8,B88,B91,B94,B95,C11,C27,C3,C34,C35,C45,C5,C51,C53,C54,C69,C71,C79,D8
`Chr1:68023600`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B22,B96,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788233.1

505 aa

252

505

Phosphoesterase

PF04185 Phosphoesterase 26-379 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788233.1`	Pfam	`PF04185`	Phosphoesterase	Family	26	379	1.9e-104	350.4	Phosphoesterase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932250.1
ATCGAAAATCTATACTTTTAACTGAGAATACAAATTATCAAACGTGGGCTCCCACCCACCATTTCAAACCGACAACATTCTTTACAAAATATTTTGGCACATCTTTGTTTCCTTTTCTTTTCTCCCTTTTCCCTTAAAATTTTCTTCAAGATTTTGAAAATCACACTCCAAAGCAGTAACAGCAAGAACCTTCTCCATTAAACCACATATCTAAATCTCTCTTCTTTCTCCCCTAAAAGGAAAATTCGAAGCTGAATCTC...

CDS

1 records

下载 CDS FASTA

LOC131005334
ATGAACAACACCATTTTCTTGATTTTGCTAATAATCTCATCAATCTTCTCCCAATCCCACTCGCAGCAGCAGCGGATCAAAACCATAGTAATCCTAGTAATGGAAAACCGCTCATTCGACCACATGCTGGGCTGGATGAAGAGATCCATCAACCCTTCAATCAACGGCGTCACCGGCGCCGAATGCAACACCGCCGCATCCACCAAAATCTGCTTCTCCGACGACGCCCGCTACGTCGACGCCGATCCGGGCCACTCCTT...

Protein

1 records

下载 Protein FASTA

XP_057788233.1
MNNTIFLILLIISSIFSQSHSQQQRIKTIVILVMENRSFDHMLGWMKRSINPSINGVTGAECNTAASTKICFSDDARYVDADPGHSFEAVSRQVFGSSASTPTMSGFAAQALTISPNLSAAVMKGFHPHRLPVYAALLSEFAVFDRWFSSIPGPTQPNRLFLYSATSHGSTSHLKKLLARGYPQKTIFDSLHENGLDFGVYFQNIPTTLFYRNMRKLKYVFKYHRYGARFGRDAREGRLPSLSVIEPRYFDLKGMAGAAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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