Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005016`

染色体: Chr01 坐标: 68161119-68166128 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005016`
名称	SmilChr01G005016
描述	probable E3 ubiquitin-protein ligase ARI2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68161119 - 68166128 / `-`

ID 对照

NCBI Gene ID	`LOC131005360`
GeneID	`131005360`
locus_tag	`-`
NCBI Name	`LOC131005360`
原始查询	`SmilChr01G005016`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase ARI2
产物	probable E3 ubiquitin-protein ligase ARI2
Arabidopsis	`AT2G16090` (ARI2) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816106] identity=70.7; qcov=0.984; evalue=0; confidence=high
Rice	`Os03g0233500` - identity=67.7; qcov=0.937; evalue=0; confidence=high
GO	GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF01485 (IBR); PF19422 (Ariadne); PF21235 (UBA_ARI1); PF22191 (IBR_1); PF22605 (IBR_2)
InterPro	-
eggNOG	-
NR	GeneID:131005360

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788269.1`
2	Cytoplasm	细胞质	1.00000	`XP_057788271.1`
3	Cytosol	细胞质基质	0.60000	`XP_057788271.1`
4	Chromosome	染色体	0.00000	`XP_057788269.1`
5	Centromere	着丝粒	0.00000	`XP_057788269.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68162636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:68162802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A22,B37,C17,C86
`Chr1:68163870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,C19
`Chr1:68164080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B112,B16
`Chr1:68164185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,B36
`Chr1:68164734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B139,B32,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788269.1

604 aa

302

604

UBA_ARI1

IBR

IBR_2

IBR_1

Ariadne

PF21235 UBA_ARI1 58-97 aa PF01485 IBR 199-261 aa PF22605 IBR_2 281-323 aa PF22191 IBR_1 284-318 aa PF19422 Ariadne 353-596 aa

XP_057788270.1

600 aa

300

600

UBA_ARI1

IBR

IBR_2

IBR_1

Ariadne

PF21235 UBA_ARI1 58-97 aa PF01485 IBR 199-261 aa PF22605 IBR_2 281-323 aa PF22191 IBR_1 284-318 aa PF19422 Ariadne 353-592 aa

XP_057788271.1

567 aa

284

567

UBA_ARI1

IBR

IBR_2

IBR_1

Ariadne

PF21235 UBA_ARI1 58-97 aa PF01485 IBR 199-261 aa PF22605 IBR_2 281-323 aa PF22191 IBR_1 284-318 aa PF19422 Ariadne 353-552 aa

XP_057788272.1

557 aa

278

557

UBA_ARI1

IBR

IBR_2

IBR_1

Ariadne

PF21235 UBA_ARI1 58-97 aa PF01485 IBR 199-261 aa PF22605 IBR_2 281-323 aa PF22191 IBR_1 284-318 aa PF19422 Ariadne 353-552 aa

XP_057788273.1

555 aa

278

555

UBA_ARI1

IBR

IBR_2

IBR_1

Ariadne

PF21235 UBA_ARI1 58-97 aa PF01485 IBR 199-261 aa PF22605 IBR_2 281-323 aa PF22191 IBR_1 284-318 aa PF19422 Ariadne 353-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788269.1`	Pfam	`PF21235`	UBA_ARI1	Domain	58	97	2.2e-09	37.6	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
`XP_057788269.1`	Pfam	`PF01485`	IBR	Domain	199	261	4.5e-17	62.6	IBR domain, a half RING-finger domain
`XP_057788269.1`	Pfam	`PF22605`	IBR_2	Domain	281	323	2.5e-07	31.4	IBR domain
`XP_057788269.1`	Pfam	`PF22191`	IBR_1	Domain	284	318	4e-06	27.3	IBR domain
`XP_057788269.1`	Pfam	`PF19422`	Ariadne	Domain	353	596	2e-127	424.8	Ariadne domain
`XP_057788270.1`	Pfam	`PF21235`	UBA_ARI1	Domain	58	97	2.2e-09	37.6	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
`XP_057788270.1`	Pfam	`PF01485`	IBR	Domain	199	261	4.6e-17	62.6	IBR domain, a half RING-finger domain
`XP_057788270.1`	Pfam	`PF22605`	IBR_2	Domain	281	323	2.5e-07	31.5	IBR domain
`XP_057788270.1`	Pfam	`PF22191`	IBR_1	Domain	284	318	4e-06	27.3	IBR domain
`XP_057788270.1`	Pfam	`PF19422`	Ariadne	Domain	353	592	3.1e-125	417.6	Ariadne domain
`XP_057788271.1`	Pfam	`PF21235`	UBA_ARI1	Domain	58	97	2e-09	37.8	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
`XP_057788271.1`	Pfam	`PF01485`	IBR	Domain	199	261	1.5e-16	60.9	IBR domain, a half RING-finger domain
`XP_057788271.1`	Pfam	`PF22605`	IBR_2	Domain	281	323	2.3e-07	31.6	IBR domain
`XP_057788271.1`	Pfam	`PF22191`	IBR_1	Domain	284	318	3.7e-06	27.4	IBR domain
`XP_057788271.1`	Pfam	`PF19422`	Ariadne	Domain	353	552	1.3e-116	389.5	Ariadne domain
`XP_057788272.1`	Pfam	`PF21235`	UBA_ARI1	Domain	58	97	1.9e-09	37.8	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
`XP_057788272.1`	Pfam	`PF01485`	IBR	Domain	199	261	3.9e-17	62.8	IBR domain, a half RING-finger domain
`XP_057788272.1`	Pfam	`PF22605`	IBR_2	Domain	281	323	2.3e-07	31.6	IBR domain
`XP_057788272.1`	Pfam	`PF22191`	IBR_1	Domain	284	318	3.7e-06	27.5	IBR domain
`XP_057788272.1`	Pfam	`PF19422`	Ariadne	Domain	353	552	4.4e-116	387.7	Ariadne domain
`XP_057788273.1`	Pfam	`PF21235`	UBA_ARI1	Domain	58	97	1.9e-09	37.8	E3 ubiquitin-protein ligase ARIH1, UBA-like domain
`XP_057788273.1`	Pfam	`PF01485`	IBR	Domain	199	261	3.7e-17	62.9	IBR domain, a half RING-finger domain
`XP_057788273.1`	Pfam	`PF22605`	IBR_2	Domain	281	323	2.2e-07	31.6	IBR domain
`XP_057788273.1`	Pfam	`PF22191`	IBR_1	Domain	284	318	3.6e-06	27.5	IBR domain
`XP_057788273.1`	Pfam	`PF19422`	Ariadne	Domain	353	551	8.5e-116	386.7	Ariadne domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057932286.1
TGTGCAACTAGTCAACCTCTTCACACTGCAACGACGTCGTACCCTAGAAAGCTTTAATAGCACACTTGAGCTCTCGACGACGCCGTAAAAGATGAGACTCGAGGCCTATATTACTCCCAATAACAATAAGCCCTCACAGACCCTTTTAAAGATTTTCTCGCTCCTCTCTTTCTCTCTCTTCAAAATTTCCCGGGAAAGAGCCGCCGATCTGATCGCGATCTTCGTTCCACTCAATTTATAGCTGCACTTATTTGTGTGCG...

XM_057932288.1
GCCGTAAAAGATGAGACTCGAGGCCTATATTACTCCCAATAACAATAAGCCCTCACAGACCCTTTTAAAGATTTTCTCGCTCCTCTCTTTCTCTCTCTTCAAAATTTCCCGGGAAAGAGCCGCCGATCTGATCGCGATCTTCGTTCCACTCAATTTATAGCTGCACTTATTTGTGTGCGTTGTGTGTGCTTATAGGGAGAGATTAATTAATTAATATAATAAGAAGTTAATTATGGAGGAAGATTACTATATGAGCGACG...

CDS

5 records

下载 CDS FASTA

LOC131005360
ATGGAGGAAGATTACTATATGAGCGACGGCAGCGAAGAGGAAGATGAAACTTATTCGTCCGATCAAGACGCGGAGCCGCTCGACGGACTCGAAAACGACGATTCCGATGCTCAGTGGCTCTCGCACAAAGCCCCTTCTTCCAAGGTAATCACAGAAGCGTCTCTGTTAGCTGCTCAGAGAGAAGATCTGCTCAAAGTAATGGACTTGCTATCAGTGAGGGAACACCATGCCAGAACTCTTCTCATTCACTACAGATGGGA...

Protein

5 records

下载 Protein FASTA

XP_057788269.1
MEEDYYMSDGSEEEDETYSSDQDAEPLDGLENDDSDAQWLSHKAPSSKVITEASLLAAQREDLLKVMDLLSVREHHARTLLIHYRWDVEKLTAVYVEKGRSCMFSDAGVSMVEIVDLDPAEPSSTVMCNICMDDVPAKDITKMDCGHDFCNNCWTEHFIVKINDGQSKRIRCMAHKCNAICDETIIRHLVSVKHPDLAEKFDRFLLESYIEDNRMVKWCPSTPHCGNAIRVENDEFCEVECSCGLQFCFSCSSEAHSPCS...

XP_057788270.1
MEEDYYMSDGSEEEDETYSSDQDAEPLDGLENDDSDAQWLSHKAPSSKVITEASLLAAQREDLLKVMDLLSVREHHARTLLIHYRWDVEKLTAVYVEKGRSCMFSDAGVSMVEIVDLDPAEPSSTVMCNICMDDVPAKDITKMDCGHDFCNNCWTEHFIVKINDGQSKRIRCMAHKCNAICDETIIRHLVSVKHPDLAEKFDRFLLESYIEDNRMVKWCPSTPHCGNAIRVENDEFCEVECSCGLQFCFSCSSEAHSPCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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