Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005018`

染色体: Chr01 坐标: 68172254-68178732 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005018`
名称	SmilChr01G005018
描述	uncharacterized SmilChr01G005018
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68172254 - 68178732 / `+`

ID 对照

NCBI Gene ID	`LOC131005381`
GeneID	`131005381`
locus_tag	`-`
NCBI Name	`LOC131005381`
原始查询	`SmilChr01G005018`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial 28S ribosomal protein S29-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838258]; symbol=AT1G16870; hit=AT1G16870; species=arabidopsis; confidence=high
产物	mitochondrial 28S ribosomal protein S29-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838258]; symbol=AT1G16870; hit=AT1G16870; species=arabidopsis; confidence=high
Arabidopsis	`AT1G16870` (AT1G16870) mitochondrial 28S ribosomal protein S29-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838258] identity=66.8; qcov=0.828; evalue=0; confidence=high
Rice	`Os07g0202900` - identity=62.2; qcov=0.795; evalue=1.04e-176; confidence=high
GO	GO:0003735 (structural constituent of ribosome); GO:0005763 (mitochondrial small ribosomal subunit)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF10236 (DAP3)
InterPro	-
eggNOG	-
NR	GeneID:131005381

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057788311.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057788311.1`
3	Nucleus	细胞核	0.00000	`XP_057788311.1`
4	Chromosome	染色体	0.00000	`XP_057788311.1`
5	Centromere	着丝粒	0.00000	`XP_057788311.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68173026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr1:68173028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B121,D5,D9
`Chr1:68173075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B53,B73,C32,C56,C68
`Chr1:68173203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:68173204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr1:68173229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:68173243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B41,B47,C25,C4,C61
`Chr1:68173265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:68173281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B139,B32
`Chr1:68173282`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C31
`Chr1:68173282`	`TA`	`T`	1bp_deletion	CDS_variant	1	C31
`Chr1:68173353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788311.1

480 aa

240

480

DAP3

PF10236 DAP3 185-364 aa

XP_057788312.1

480 aa

240

480

DAP3

PF10236 DAP3 185-364 aa

XP_057788313.1

459 aa

230

459

DAP3

PF10236 DAP3 185-381 aa

XP_057788314.1

480 aa

240

480

DAP3

PF10236 DAP3 185-364 aa

XP_057788315.1

459 aa

230

459

DAP3

PF10236 DAP3 185-381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788311.1`	Pfam	`PF10236`	DAP3	Family	185	364	2.2e-28	100.1	Mitochondrial ribosomal death-associated protein 3
`XP_057788312.1`	Pfam	`PF10236`	DAP3	Family	185	364	2.2e-28	100.1	Mitochondrial ribosomal death-associated protein 3
`XP_057788313.1`	Pfam	`PF10236`	DAP3	Family	185	381	3.4e-31	109.3	Mitochondrial ribosomal death-associated protein 3
`XP_057788314.1`	Pfam	`PF10236`	DAP3	Family	185	364	2.2e-28	100.1	Mitochondrial ribosomal death-associated protein 3
`XP_057788315.1`	Pfam	`PF10236`	DAP3	Family	185	381	3.4e-31	109.3	Mitochondrial ribosomal death-associated protein 3

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057932332.1
TATTTCTTTTCTTGAAATACTATACTCCACAAATTTTATCTCTTGTTATTTACGCCTCTCTCTCACACCAGAAAACCCTTTTCCTCTTTCTGCCTTTCTCGTAGTCTTGCATCTCTCTCACACTCGCTCGTCGTGCCGCACAGATCTTCCCACCTCGCCTTCTCCGGCAACAGCTGTAGTACGGTACGTCTCCTTTTTTCATCGCCCCATCCGCCTCGCCTCTCACTCGCCGCCACCGTCTTCTCCGCTAACAGCCGCAA...

XM_057932331.1
TACTATACTCCACAAATTTTATCTCTTGTTATTTACGCCTCTCTCTCACACCAGAAAACCCTTTTCCTCTTTCTGCCTTTCTCGTAGTCTTGCATCTCTCTCACACTCGCTCGTCGTGCCGCACAGATCTTCCCACCTCGCCTTCTCCGGCAACAGCTGTAGTACGGTACGTCTCCTTTTTTCATCGCCCCATCCGCCTCGCCTCTCACTCGCCGCCACCGTCTTCTCCGCTAACAGCCGCAAAAGGGAAAATCAGCAGT...

CDS

5 records

下载 CDS FASTA

LOC131005381
ATGCTGCTTCGATCGCTCCTTCGAGCAACCGCCGGCGCCGCGTCACTCCGGCAATCTCAGTGGCAGCTTACCAATTGCCGGAGCATGGCCTCGAAAACGCCTAAAGGTGGTTCCAGCAAAGGAAAGAACCCCCAGCCAAAATTTGATAAGAAAACACAGTCGAAATCCGATCTCAAGGATAAGAAGCCCCAAGAAGTGCTGGTGGCAAGCCCCGAATCTATTGCTAAACAAGACGCGGAGCTCCGCCGCCGCCTGCTGGC...

Protein

5 records

下载 Protein FASTA

XP_057788311.1
MLLRSLLRATAGAASLRQSQWQLTNCRSMASKTPKGGSSKGKNPQPKFDKKTQSKSDLKDKKPQEVLVASPESIAKQDAELRRRLLAEDEKNPALDVGPNGHPLFTSAPSLSSLTGDDVNHYFRFSLKELNEVLPEGLPLGMVKEFEESCRSALLVRQCFINLRDNFRQAIDPSLAAKSRGLKVRKQIVLDGLLSCGKSTVLAMLVNWARTEGWLVLYVPRGRDWTLGGLFYKNPDTNLWDTPVQAVNILQDFLKFNKSL...

XP_057788312.1
MLLRSLLRATAGAASLRQSQWQLTNCRSMASKTPKGGSSKGKNPQPKFDKKTQSKSDLKDKKPQEVLVASPESIAKQDAELRRRLLAEDEKNPALDVGPNGHPLFTSAPSLSSLTGDDVNHYFRFSLKELNEVLPEGLPLGMVKEFEESCRSALLVRQCFINLRDNFRQAIDPSLAAKSRGLKVRKQIVLDGLLSCGKSTVLAMLVNWARTEGWLVLYVPRGRDWTLGGLFYKNPDTNLWDTPVQAVNILQDFLKFNKSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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