Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005019`

染色体: Chr01 坐标: 68182488-68185295 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005019`
名称	SmilChr01G005019
描述	uncharacterized SmilChr01G005019
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68182488 - 68185295 / `-`

ID 对照

NCBI Gene ID	`LOC131005419`
GeneID	`131005419`
locus_tag	`-`
NCBI Name	`LOC131005419`
原始查询	`SmilChr01G005019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829586]; symbol=AT4G34360; hit=AT4G34360; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829586]; symbol=AT4G34360; hit=AT4G34360; species=arabidopsis; confidence=high
Arabidopsis	`AT4G34360` (AT4G34360) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829586] identity=74.2; qcov=0.956; evalue=1.75e-135; confidence=high
Rice	`Os11g0557700` - identity=64.3; qcov=0.972; evalue=1.05e-120; confidence=high
GO	-
KEGG	-
Pfam	PF01209 (Ubie_methyltran); PF01564 (Spermine_synth); PF07021 (MetW); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131005419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788391.1`
2	Nucleoplasm	核质	1.00000	`XP_057788391.1`
3	Cytoplasm	细胞质	1.00000	`XP_057788391.1`
4	Cytosol	细胞质基质	1.00000	`XP_057788391.1`
5	Chromosome	染色体	0.00000	`XP_057788391.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68183024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B139,B2,C3
`Chr1:68183172`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	B27
`Chr1:68183172`	`ACC`	`A`	2bp_deletion	CDS_variant	1	B27
`Chr1:68184681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,B5,C18
`Chr1:68185146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788391.1

251 aa

126

251

Spermine_synth

MetW

Ubie_methyltran

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF01564 Spermine_synth 45-181 aa PF07021 MetW 46-131 aa PF01209 Ubie_methyltran 51-125 aa PF13847 Methyltransf_31 53-175 aa PF13649 Methyltransf_25 58-167 aa PF08242 Methyltransf_12 59-169 aa PF08241 Methyltransf_11 59-170 aa

XP_057788392.1

251 aa

126

251

Spermine_synth

MetW

Ubie_methyltran

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788391.1`	Pfam	`PF01564`	Spermine_synth	Domain	45	181	1.2e-05	25.7	Spermine/spermidine synthase domain
`XP_057788391.1`	Pfam	`PF07021`	MetW	Family	46	131	9.3e-05	22.8	Methionine biosynthesis protein MetW
`XP_057788391.1`	Pfam	`PF01209`	Ubie_methyltran	Family	51	125	6.6e-08	32.9	ubiE/COQ5 methyltransferase family
`XP_057788391.1`	Pfam	`PF13847`	Methyltransf_31	Domain	53	175	1.7e-18	67.5	Methyltransferase domain
`XP_057788391.1`	Pfam	`PF13649`	Methyltransf_25	Domain	58	167	1.5e-15	58.4	Methyltransferase domain
`XP_057788391.1`	Pfam	`PF08242`	Methyltransf_12	Domain	59	169	6.5e-09	37.1	Methyltransferase domain
`XP_057788391.1`	Pfam	`PF08241`	Methyltransf_11	Domain	59	170	1.6e-15	58.2	Methyltransferase domain
`XP_057788392.1`	Pfam	`PF01564`	Spermine_synth	Domain	45	181	1.2e-05	25.7	Spermine/spermidine synthase domain
`XP_057788392.1`	Pfam	`PF07021`	MetW	Family	46	131	9.3e-05	22.8	Methionine biosynthesis protein MetW
`XP_057788392.1`	Pfam	`PF01209`	Ubie_methyltran	Family	51	125	6.6e-08	32.9	ubiE/COQ5 methyltransferase family
`XP_057788392.1`	Pfam	`PF13847`	Methyltransf_31	Domain	53	175	1.7e-18	67.5	Methyltransferase domain
`XP_057788392.1`	Pfam	`PF13649`	Methyltransf_25	Domain	58	167	1.5e-15	58.4	Methyltransferase domain
`XP_057788392.1`	Pfam	`PF08242`	Methyltransf_12	Domain	59	169	6.5e-09	37.1	Methyltransferase domain
`XP_057788392.1`	Pfam	`PF08241`	Methyltransf_11	Domain	59	170	1.6e-15	58.2	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009095254.1
AATGTCAAAAAAAAAAAAAATACTGCGATGCCAAAATAACTACCAACTGTCGACGGGTTTAATCTAGGGTTTTAGTCCCAAACCCACCCCTCAAATTTGGGCCTAATTCTGCGAATCATGGACCCATCAGAGGCGCCGAAATGCGACGTCGCTCCGGCCACTGCTACCGCATATCTCGACCCAAACTATTGGGATCAGAGGTTTCATCAAGAAGAGCATTACGAGTGGTTCAAAGACTATTCTCACTTTCGTCACCTCAT...

XM_057932408.1
AATACTGCGATGCCAAAATAACTACCAACTGTCGACGGGTTTAATCTAGGGTTTTAGTCCCAAACCCACCCCTCAAATTTGGGCCTAATTCTGCGAATCATGGACCCATCAGAGGCGCCGAAATGCGACGTCGCTCCGGCCACTGCTACCGCATATCTCGACCCAAACTATTGGGATCAGAGGTTTCATCAAGAAGAGCATTACGAGTGGTTCAAAGACTATTCTCACTTTCGTCACCTCATTCTTGAATACGTTAAATC...

CDS

2 records

下载 CDS FASTA

LOC131005419
ATGGACCCATCAGAGGCGCCGAAATGCGACGTCGCTCCGGCCACTGCTACCGCATATCTCGACCCAAACTATTGGGATCAGAGGTTTCATCAAGAAGAGCATTACGAGTGGTTCAAAGACTATTCTCACTTTCGTCACCTCATTCTTGAATACGTTAAATCCAAGTCTGCTGTATTAGAGGTTGGATGTGGAAATTCTCAGCTGTGTGAAGAGCTGTATAAAGATGGAATTACTGATCTTACCTGCATTGACTTGTCATC...

Protein

2 records

下载 Protein FASTA

XP_057788391.1
MDPSEAPKCDVAPATATAYLDPNYWDQRFHQEEHYEWFKDYSHFRHLILEYVKSKSAVLEVGCGNSQLCEELYKDGITDLTCIDLSSVAVEKMKQRLLTKGYREIKVLEADMLQMPFEDACFDVVVEKGTMDVLFVDSGDPWNPEPVTVSKVMAMLEGVHRVLKPNGIFISITFGQPHFRRPLFNAPTFTWSIEWKTFGDGFHYFFYILKKGERSSDDVEYIEKPDLPSLSLYHEELEGEDYLFRTNLDEM

XP_057788392.1
MDPSEAPKCDVAPATATAYLDPNYWDQRFHQEEHYEWFKDYSHFRHLILEYVKSKSAVLEVGCGNSQLCEELYKDGITDLTCIDLSSVAVEKMKQRLLTKGYREIKVLEADMLQMPFEDACFDVVVEKGTMDVLFVDSGDPWNPEPVTVSKVMAMLEGVHRVLKPNGIFISITFGQPHFRRPLFNAPTFTWSIEWKTFGDGFHYFFYILKKGERSSDDVEYIEKPDLPSLSLYHEELEGEDYLFRTNLDEM

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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