Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005021`

染色体: Chr01 坐标: 68190795-68194202 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005021`
名称	SmilChr01G005021
描述	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68190795 - 68194202 / `-`

ID 对照

NCBI Gene ID	`LOC131005379`
GeneID	`131005379`
locus_tag	`-`
NCBI Name	`LOC131005379`
原始查询	`SmilChr01G005021`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like
产物	4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C chloroplastic-like
Arabidopsis	`AT4G34350` (HDR) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Source:NCBI gene (formerly Entrezgene);Acc:829585] identity=73.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0731900` (OsHDR) - identity=77.3; qcov=0.978; evalue=0; confidence=high
GO	GO:0019288 (isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway); GO:0046872 (metal ion binding); GO:0050992 (dimethylallyl diphosphate biosynthetic process); GO:0051745 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02401 (LYTB)
InterPro	-
eggNOG	-
NR	GeneID:131005379

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788308.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057788308.1`
3	Nucleus	细胞核	0.00000	`XP_057788308.1`
4	Chromosome	染色体	0.00000	`XP_057788308.1`
5	Centromere	着丝粒	0.00000	`XP_057788308.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68191111`	`GTT`	`G`	2bp_deletion	frameshift_variant	10	A10,B118,B23,B51,B91,C26,C30,C52,C57,D7
`Chr1:68191141`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C2
`Chr1:68191141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:68191180`	`CGA`	`C`	2bp_deletion	frameshift_variant	10	A4,B121,B7,B89,C37,C85,D11,D2,D5,D9
`Chr1:68192493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,B139,B37,B59,C19
`Chr1:68192524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:68192580`	`G`	`GTA`	2bp_insertion	frameshift_variant	76	A11,A2,A20,A23,A4,A6,A9,B1,B101,B109,B113,B117,B118,B120,B122,B125,B128,B13,B134,B135,B137,B139,B2,B24,B28,B31,B37,B4,B44,B45,B46,B5,B56,B57,B58,B59,B6,B64,B67,B68,B70,B74,B75,B82,B85,B88,B89,B95,B96,B98,C19,C24,C25,C31,C32,C41,C42,C45,C46,C54,C55,C58,C61,C63,C68,C7,C70,C78,C80,C82,C85,D1,D10,D2,D5,D7
`Chr1:68192582`	`A`	`ATG`	2bp_insertion	frameshift_variant	2	B106,B99
`Chr1:68192582`	`A`	`ATG`	2bp_insertion	CDS_variant	2	B106,B99
`Chr1:68192618`	`A`	`AT`	1bp_insertion	frameshift_variant	12	B122,B128,B139,B37,B46,B59,B98,C19,C42,C85,D10,D2
`Chr1:68192619`	`ACC`	`A`	2bp_deletion	frameshift_variant	12	B122,B128,B139,B37,B46,B59,B98,C19,C42,C85,D10,D2
`Chr1:68192703`	`GA`	`G`	1bp_deletion	frameshift_variant	97	A11,A14,A2,A23,A4,A6,A7,A9,B1,B101,B103,B105,B106,B109,B113,B115,B117,B118,B119,B120,B122,B124,B125,B128,B13,B134,B137,B138,B139,B18,B2,B24,B28,B30,B31,B4,B40,B44,B45,B46,B49,B5,B52,B58,B59,B6,B64,B66,B67,B68,B70,B71,B74,B75,B76,B82,B85,B88,B89,B95,B96,B98,B99,C17,C19,C24,C25,C28,C31,C32,C36,C4,C41,C42,C46,C54,C55,C58,C59,C61,C63,C64,C66,C68,C7,C70,C78,C80,C82,C84,C85,D1,D10,D2,D5,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788308.1

498 aa

249

498

LYTB

PF02401 LYTB 110-443 aa

XP_057788309.1

463 aa

232

463

LYTB

PF02401 LYTB 110-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788308.1`	Pfam	`PF02401`	LYTB	Family	110	443	1e-76	258.5	LytB protein
`XP_057788309.1`	Pfam	`PF02401`	LYTB	Family	110	451	1.3e-79	267.9	LytB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932326.1
CAAACGTCAACCTGCATCGTGGTTTGGAATCAATTTAGGAGAGCGACAAATACAAGGAAAATCCAATTAAAAATTAATAATTTAATTAACTTGATTTGGTGAAGAATGCATCAGCATTATTTATCACATTAAAATTAAATAAATGCAATTCGACGAAGACGACTCTGGCAAGAGATAAATTGCCGAAATCCACTCCAGCTCTGTAACAATCCACACTCGCAATTCATTTCACATGGCGATTTCTCTGCAGTTCTGTCGCA...

XM_057932325.1
AAAATTAATAATTTAATTAACTTGATTTGGTGAAGAATGCATCAGCATTATTTATCACATTAAAATTAAATAAATGCAATTCGACGAAGACGACTCTGGCAAGAGATAAATTGCCGAAATCCACTCCAGCTCTGTAACAATCCACACTCGCAATTCATTTCACATGGCGATTTCTCTGCAGTTCTGTCGCATCTCGACGCGCACTGAAATCCTGTTGCCGGAGGCCAGGTTGTCCCGGCCGCGGAGGCCTTCCTCCCTCC...

CDS

2 records

下载 CDS FASTA

LOC131005379
ATGGCGATTTCTCTGCAGTTCTGTCGCATCTCGACGCGCACTGAAATCCTGTTGCCGGAGGCCAGGTTGTCCCGGCCGCGGAGGCCTTCCTCCCTCCGGTGCTCCGCCGCCGGAGATGGCGGCGCCTCCTCCTCCGCCGTTGCCACTGAATCCGCCGATTTTGACTCAAAGGTTTTCCGTCACAACCTGACGAGGAGTAAGAATTACAATCGGAAGGGGTTTGGGCATAAAGAGGAGACTCTCGAGCAAATGAGTCAAGA...

Protein

2 records

下载 Protein FASTA

XP_057788308.1
MAISLQFCRISTRTEILLPEARLSRPRRPSSLRCSAAGDGGASSSAVATESADFDSKVFRHNLTRSKNYNRKGFGHKEETLEQMSQEFTSDIIKKLKENGYQYTWGNVTVKLAESYGFCWGVERAVQIAYEARKQFPTENIWLTNEVIHNPTVNERLEEMNVKIIPLNNGKKEFDVVDKGDVVVLPAFGAAVDEMRILSDKNVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETVATASFAGKFVIVKNMTEA...

XP_057788309.1
MAISLQFCRISTRTEILLPEARLSRPRRPSSLRCSAAGDGGASSSAVATESADFDSKVFRHNLTRSKNYNRKGFGHKEETLEQMSQEFTSDIIKKLKENGYQYTWGNVTVKLAESYGFCWGVERAVQIAYEARKQFPTENIWLTNEVIHNPTVNERLEEMNVKIIPLNNGKKEFDVVDKGDVVVLPAFGAAVDEMRILSDKNVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETVATASFAGKFVIVKNMTEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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