Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005026`

染色体: Chr01 坐标: 68217077-68226841 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005026`
名称	SmilChr01G005026
描述	uncharacterized SmilChr01G005026
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68217077 - 68226841 / `-`

ID 对照

NCBI Gene ID	`LOC131005346`
GeneID	`131005346`
locus_tag	`-`
NCBI Name	`LOC131005346`
原始查询	`SmilChr01G005026`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821419]; symbol=AT3G18860; hit=AT3G18860; species=arabidopsis; confidence=high
产物	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821419]; symbol=AT3G18860; hit=AT3G18860; species=arabidopsis; confidence=high
Arabidopsis	`AT3G18860` (AT3G18860) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821419] identity=69.2; qcov=0.992; evalue=0; confidence=high
Rice	`Os07g0123700` (OsWD40-136) - identity=64.5; qcov=0.987; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0010992 (ubiquitin recycling); GO:0043130 (ubiquitin binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF08324 (PUL); PF09070 (PFU)
InterPro	-
eggNOG	-
NR	GeneID:131005346

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788250.1`
2	Nucleus	细胞核	0.80000	`XP_057788250.1`
3	Chromosome	染色体	0.00000	`XP_057788250.1`
4	Centromere	着丝粒	0.00000	`XP_057788250.1`
5	Chromatin	染色质	0.00000	`XP_057788250.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68217810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B130,B5,B90,B92,C82
`Chr1:68218028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:68219093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:68219803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:68220171`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr1:68221085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:68222378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:68223546`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr1:68224375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr1:68224771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788250.1

765 aa

382

765

WD40

PFU

PUL

PF00400 WD40 17-49 aa PF00400 WD40 106-141 aa PF00400 WD40 146-180 aa PF00400 WD40 184-219 aa PF00400 WD40 225-259 aa PF00400 WD40 263-297 aa PF09070 PFU 344-453 aa PF08324 PUL 492-757 aa

XP_057788251.1

765 aa

382

765

WD40

PFU

PUL

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	17	49	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	106	141	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	146	180	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	184	219	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	225	259	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF00400`	WD40	Repeat	263	297	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788250.1`	Pfam	`PF09070`	PFU	Domain	344	453	1.7e-39	135.2	PFU (PLAA family ubiquitin binding)
`XP_057788250.1`	Pfam	`PF08324`	PUL	Repeat	492	757	1e-63	215.9	PUL domain
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	17	49	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	106	141	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	146	180	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	184	219	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	225	259	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF00400`	WD40	Repeat	263	297	2.6e-37	126.3	WD domain, G-beta repeat
`XP_057788251.1`	Pfam	`PF09070`	PFU	Domain	344	453	1.7e-39	135.2	PFU (PLAA family ubiquitin binding)
`XP_057788251.1`	Pfam	`PF08324`	PUL	Repeat	492	757	1e-63	215.9	PUL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932267.1
TAGCGTATGGGCTCAAGAGTGCAATCTTGGCCCGTTCCAAAACCTTTTGGCCCACTTCAAGAACTGAAGAGAGAGAGACAGAGAGAGAAAGAGAGGGGAAGAGGGAGACGGAGAGGTGGAGTGGAGAGAGAGAAGACTGTTCTACTAACTTGCGTTGCAACCTATTCCCAAATCTAATACCCTTGGAATAATTTCCTTGTGCCAAGAACACACTGGAAAGCTAACTCTTCCCGAATCTCACACTACATTTCTGAAATTCA...

XM_057932268.1
AACCTTTTGGCCCACTTCAAGAACTGAAGAGAGAGAGACAGAGAGAGAAAGAGAGGGGAAGAGGGAGACGGAGAGGTGGAGTGGAGAGAGAGAAGACTGTTCTACTAACTTGCGTTGCAACCTATTCCCAAATCTAATACCCTTGGAATAATTTCCTTGTGCCAAGAACACACTGGAAAGCTAACTCTTCCCGAATCTCACACTACATTTCTGAAATTCACTGATCAGAGCAACCTCTAATAAACCCTACATTTTTCGTG...

CDS

2 records

下载 CDS FASTA

LOC131005346
ATGGCTTCAAATTCCATGGATATCGATTTCAAAGAGTATCAATTGAGGTGCCAACTTCGAGGCCACGAGGATGATGCTCGAGGTATATGCATATGCGGCAATGCTGGCATAGCAACTTCTTCAAGAGACAGAACAATTAGATTCTGGACCTTAGATGAATCACAAAAGCGTGATTATACCATCTCAAAGATATTATTGGGCCACACTAGCTTTGTGGGGCCATTGGCTTGGATTTCTCCAAATGAGGAGTTTCCAGAAGG...

Protein

2 records

下载 Protein FASTA

XP_057788250.1
MASNSMDIDFKEYQLRCQLRGHEDDARGICICGNAGIATSSRDRTIRFWTLDESQKRDYTISKILLGHTSFVGPLAWISPNEEFPEGGIISGGMDTLLLVWNLATGEKVQTLKGHKLQVTGIALDGLDVVSSSVDCTLRRWRGSQQVEEWEAHKAAIQSVIKLPSGELVTGSSDMTMKLWKGKSCIHTFQGHTDTVRGVAIMPNLGILSASHDGSIRLWAVSGEILLEMVGHVSIVYSVDAHASGLIVSASEDCSAKIWK...

XP_057788251.1
MASNSMDIDFKEYQLRCQLRGHEDDARGICICGNAGIATSSRDRTIRFWTLDESQKRDYTISKILLGHTSFVGPLAWISPNEEFPEGGIISGGMDTLLLVWNLATGEKVQTLKGHKLQVTGIALDGLDVVSSSVDCTLRRWRGSQQVEEWEAHKAAIQSVIKLPSGELVTGSSDMTMKLWKGKSCIHTFQGHTDTVRGVAIMPNLGILSASHDGSIRLWAVSGEILLEMVGHVSIVYSVDAHASGLIVSASEDCSAKIWK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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