Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005036`

染色体: Chr01 坐标: 68298512-68304157 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005036`
名称	SmilChr01G005036
描述	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68298512 - 68304157 / `-`

ID 对照

NCBI Gene ID	`LOC131005383`
GeneID	`131005383`
locus_tag	`-`
NCBI Name	`LOC131005383`
原始查询	`SmilChr01G005036`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like
产物	dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like
Arabidopsis	`AT5G66680` (DGL1) dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:836801] identity=72.5; qcov=1; evalue=0; confidence=high
Rice	`Os07g0209000` (OsDGL1) - identity=76.8; qcov=0.945; evalue=0; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0008250 (oligosaccharyltransferase complex); GO:0018279 (GO:0018279)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF03345 (OST48_N); PF23358 (OST48_MD)
InterPro	-
eggNOG	-
NR	GeneID:131005383

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057788317.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057788317.1`
3	Nucleus	细胞核	0.00000	`XP_057788317.1`
4	Chromosome	染色体	0.00000	`XP_057788317.1`
5	Centromere	着丝粒	0.00000	`XP_057788317.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68298908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,C16,C21
`Chr1:68299337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C3
`Chr1:68299360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr1:68299403`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B22,B77,C33,C54
`Chr1:68299403`	`T`	`TA`	1bp_insertion	CDS_variant	4	B22,B77,C33,C54
`Chr1:68299442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,C82
`Chr1:68299460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr1:68300253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:68300429`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B64
`Chr1:68300429`	`G`	`GT`	1bp_insertion	CDS_variant	1	B64
`Chr1:68301149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:68301995`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788317.1

474 aa

237

474

OST48_N

OST48_MD

PF03345 OST48_N 28-288 aa PF23358 OST48_MD 299-435 aa

XP_057788318.1

437 aa

218

437

OST48_N

OST48_MD

PF03345 OST48_N 28-288 aa PF23358 OST48_MD 299-437 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788317.1`	Pfam	`PF03345`	OST48_N	Domain	28	288	1.2e-72	245.1	OST48, N-terminal domain
`XP_057788317.1`	Pfam	`PF23358`	OST48_MD	Domain	299	435	2e-45	155.0	OST48 middle domain
`XP_057788318.1`	Pfam	`PF03345`	OST48_N	Domain	28	288	9.6e-73	245.4	OST48, N-terminal domain
`XP_057788318.1`	Pfam	`PF23358`	OST48_MD	Domain	299	437	3.1e-48	164.1	OST48 middle domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932335.1
GGGTAAGTCAGTACCCAAGGCCAGGACTTCTCTCCTGTGCCTCACCGTCCAATTCTCTCAATTTTGAAGACGATTTCCACATGTTTACAAATACTAGTATTAAAAAAAAAAAAAAAAATATGGGGTTGGAGGGCGAAGTGCAACACACTCTCACACAAGTGTGTGATTTCCGGAAACTCCAGAGCTAAAACCCTTTTCGAGATCGAGCGCCATGATCAGAAGATCTCTCTGTTTATTCCTGGTTTCTGCTCCGCTATTCG...

XM_057932334.1
GGGTAAGTCAGTACCCAAGGCCAGGACTTCTCTCCTGTGCCTCACCGTCCAATTCTCTCAATTTTGAAGACGATTTCCACATGTTTACAAATACTAGTATTAAAAAAAAAAAAAAAAATATGGGGTTGGAGGGCGAAGTGCAACACACTCTCACACAAGTGTGTGATTTCCGGAAACTCCAGAGCTAAAACCCTTTTCGAGATCGAGCGCCATGATCAGAAGATCTCTCTGTTTATTCCTGGTTTCTGCTCCGCTATTCG...

CDS

2 records

下载 CDS FASTA

LOC131005383
ATGATCAGAAGATCTCTCTGTTTATTCCTGGTTTCTGCTCCGCTATTCGCGATCCTATGCACCGCATTCTCTGAAGAAAAGCCCACGGATCGCCGTGTTCTGGTCCTGCTCGACGACTTCGCGATTAAGTCGTCGCATTCCATCTTCTTCAAGTCGTTGGAGACCAGAGGATTTGATCTCGATTTCAAGCTCGCTGATGATCCCAAGCTCGCTCTGCAGAGATATGGACAGTATTTGTACGACGCTGTTGTTCTCTTCGC...

Protein

2 records

下载 Protein FASTA

XP_057788317.1
MIRRSLCLFLVSAPLFAILCTAFSEEKPTDRRVLVLLDDFAIKSSHSIFFKSLETRGFDLDFKLADDPKLALQRYGQYLYDAVVLFAPTVDRFGGSVDAASLLEFVDSGHDLILAADKSASDLIREIAVECGVDFDEDSAAMAIDHTNHAVSETEGDHTLIASDDFIHSEVILGSRKLEAPVLFKGIGHSINPASNLVLKVLSASPAAYSANPKSKLSSPPNLIGSAISLVSVVQARNNARILISGSLSMFSDRFFRSGV...

XP_057788318.1
MIRRSLCLFLVSAPLFAILCTAFSEEKPTDRRVLVLLDDFAIKSSHSIFFKSLETRGFDLDFKLADDPKLALQRYGQYLYDAVVLFAPTVDRFGGSVDAASLLEFVDSGHDLILAADKSASDLIREIAVECGVDFDEDSAAMAIDHTNHAVSETEGDHTLIASDDFIHSEVILGSRKLEAPVLFKGIGHSINPASNLVLKVLSASPAAYSANPKSKLSSPPNLIGSAISLVSVVQARNNARILISGSLSMFSDRFFRSGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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