当前解析结果
SmilChr01G005037| 统一新 Gene ID | SmilChr01G005037 |
|---|---|
| 名称 | SmilChr01G005037 |
| 描述 | mediator of RNA polymerase II transcription subunit 13 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68307500 - 68325829 / + |
| NCBI Gene ID | LOC131005341 |
|---|---|
| GeneID | 131005341 |
| locus_tag | - |
| NCBI Name | LOC131005341 |
| 原始查询 | SmilChr01G005037 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mediator of RNA polymerase II transcription subunit 13 |
| 产物 | mediator of RNA polymerase II transcription subunit 13 |
| Arabidopsis | AT1G55325 (GCT)RNA polymerase II transcription mediator [Source:NCBI gene (formerly Entrezgene);Acc:841978] identity=57.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0447500 (OsMed13_1)- identity=52.7; qcov=0.3; evalue=0; confidence=low |
| GO | GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016592 (mediator complex) |
| KEGG | - |
| Pfam | PF06333 (Med13_C); PF11597 (Med13_N); PF18296 (MID_MedPIWI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005341 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057788240.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057788240.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057788240.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788240.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788240.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68310234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:68310391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B7 |
Chr1:68310558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B140 |
Chr1:68312655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:68312727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr1:68312756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:68314782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C3 |
Chr1:68314935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:68315039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B47,C4,C65 |
Chr1:68315064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr1:68317054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,C82 |
Chr1:68317088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,C4,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788240.1PF11597
Med13_N 2-250 aa
PF18296
MID_MedPIWI 1153-1387 aa
PF06333
Med13_C 1555-1947 aa
XP_057788241.1PF11597
Med13_N 2-250 aa
PF18296
MID_MedPIWI 1148-1382 aa
PF06333
Med13_C 1550-1942 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788240.1 |
Pfam | PF11597 |
Med13_N | Domain | 2 | 250 | 3.7e-16 | 60.2 | Mediator complex subunit 13 N-terminal |
XP_057788240.1 |
Pfam | PF18296 |
MID_MedPIWI | Domain | 1153 | 1387 | 2.6e-39 | 135.8 | MID domain of medPIWI |
XP_057788240.1 |
Pfam | PF06333 |
Med13_C | Domain | 1555 | 1947 | 3e-16 | 60.4 | Mediator complex subunit 13 C-terminal domain |
XP_057788241.1 |
Pfam | PF11597 |
Med13_N | Domain | 2 | 250 | 9.3e-16 | 58.9 | Mediator complex subunit 13 N-terminal |
XP_057788241.1 |
Pfam | PF18296 |
MID_MedPIWI | Domain | 1148 | 1382 | 2.5e-39 | 135.8 | MID domain of medPIWI |
XP_057788241.1 |
Pfam | PF06333 |
Med13_C | Domain | 1550 | 1942 | 2.2e-16 | 60.8 | Mediator complex subunit 13 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。