当前解析结果
SmilChr01G005046| 统一新 Gene ID | SmilChr01G005046 |
|---|---|
| 名称 | SmilChr01G005046 |
| 描述 | uncharacterized SmilChr01G005046 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68397793 - 68401166 / + |
| NCBI Gene ID | LOC131005401 |
|---|---|
| GeneID | 131005401 |
| locus_tag | - |
| NCBI Name | LOC131005401 |
| 原始查询 | SmilChr01G005046 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TLD-domain containing nucleolar protein [Source:NCBI gene (formerly Entrezgene);Acc:815108]; symbol=AT2G05590; hit=AT2G05590; species=arabidopsis; confidence=high |
| 产物 | TLD-domain containing nucleolar protein [Source:NCBI gene (formerly Entrezgene);Acc:815108]; symbol=AT2G05590; hit=AT2G05590; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G05590 (AT2G05590)TLD-domain containing nucleolar protein [Source:NCBI gene (formerly Entrezgene);Acc:815108] identity=48.6; qcov=1.01; evalue=8.48e-99; confidence=high |
| Rice | Os07g0438700- identity=46.1; qcov=1.03; evalue=3.68e-92; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07534 (TLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005401 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788356.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057788356.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057788357.1 |
| 4 | Endosome | 内体 | 0.20000 | XP_057788357.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788356.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68398097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:68399292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B112,B16 |
Chr1:68399293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B74,B96 |
Chr1:68399358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr1:68399479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B68,B96 |
Chr1:68399812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:68400531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr1:68400541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B68,B96 |
Chr1:68400763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B19,C2,C43,C62 |
Chr1:68400811 |
CT |
C |
1bp_deletion | frameshift_variant | 201 | A1,A10,A13,A16,A19,A2,A22,A24,A3,A4,A5,A7,A8,B1,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B110,B111,B112,B114,B115,B117,B118,B12,B121,B123,B124,B126,B127,B128,B131,B134,B135,B136,B140,B18,B19,B20,B21,B22,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B46,B47,B48,B49,B5,B51,B53,B54,B55,B56,B57,B59,B6,B60,B61,B62,B63,B64,B65,B68,B7,B71,B72,B73,B74,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C28,C29,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C75,C8,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8,D9 |
Chr1:68400822 |
TC |
T |
1bp_deletion | frameshift_variant | 200 | A1,A10,A13,A15,A16,A19,A2,A24,A3,A4,A5,A7,A8,B1,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B110,B111,B112,B114,B115,B117,B118,B12,B121,B123,B124,B126,B127,B128,B131,B134,B135,B136,B140,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B36,B38,B39,B4,B40,B41,B42,B43,B46,B47,B48,B49,B5,B51,B53,B54,B56,B57,B59,B6,B60,B61,B62,B63,B64,B65,B68,B7,B71,B72,B73,B74,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C28,C29,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C75,C8,C80,C82,C83,C84,C85,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8,D9 |
Chr1:68400849 |
G |
A |
EMS_canonical_SNV | stop_gained | 120 | A13,A16,A19,A24,A4,A5,A8,B1,B10,B103,B105,B106,B107,B108,B109,B112,B114,B12,B121,B124,B126,B127,B128,B131,B135,B140,B18,B19,B22,B23,B25,B30,B31,B32,B34,B35,B36,B38,B4,B41,B42,B43,B47,B48,B49,B5,B51,B59,B6,B60,B61,B63,B64,B65,B72,B76,B77,B78,B8,B82,B83,B85,B86,B87,B9,B90,B91,B92,B93,B95,B97,C1,C10,C12,C13,C15,C19,C2,C21,C23,C24,C25,C29,C3,C33,C35,C36,C39,C4,C40,C41,C42,C43,C45,C49,C51,C52,C54,C55,C56,C57,C59,C6,C60,C62,C65,C69,C70,C74,C80,C82,C83,C84,C9,D1,D10,D11,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788356.1PF07534
TLD 155-317 aa
XP_057788357.1PF07534
TLD 155-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788356.1 |
Pfam | PF07534 |
TLD | Domain | 155 | 317 | 6.6e-35 | 121.2 | TLDc domain |
XP_057788357.1 |
Pfam | PF07534 |
TLD | Domain | 155 | 320 | 3.3e-37 | 128.7 | TLDc domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。