当前解析结果
SmilChr01G005047| 统一新 Gene ID | SmilChr01G005047 |
|---|---|
| 名称 | SmilChr01G005047 |
| 描述 | ABC transporter I family member 10-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68401320 - 68404762 / - |
| NCBI Gene ID | LOC131005417 |
|---|---|
| GeneID | 131005417 |
| locus_tag | - |
| NCBI Name | LOC131005417 |
| 原始查询 | SmilChr01G005047 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter I family member 10-like |
| 产物 | ABC transporter I family member 10-like |
| Arabidopsis | AT4G33460 (ABCI10)ABC transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:829483] identity=70.8; qcov=0.869; evalue=1.96e-124; confidence=high |
| Rice | Os01g0770500 (OsABCI6)- identity=66.1; qcov=0.869; evalue=1.33e-116; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0009941 (chloroplast envelope); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057788389.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788389.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788389.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788389.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788389.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68401519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr1:68401546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B56,B96 |
Chr1:68401561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:68401602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B74,B96,D4 |
Chr1:68401614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,D11 |
Chr1:68402530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A20,B132,C31,C41 |
Chr1:68402554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr1:68402563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B74,B96,C2 |
Chr1:68402587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr1:68402613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,C64,C66 |
Chr1:68402777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B125,B21,B7,C86 |
Chr1:68402804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B101,B119,B12,C58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788389.1PF00005
ABC_tran 59-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788389.1 |
Pfam | PF00005 |
ABC_tran | Domain | 59 | 191 | 7.2e-28 | 98.6 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。