当前解析结果
SmilChr01G005049| 统一新 Gene ID | SmilChr01G005049 |
|---|---|
| 名称 | SmilChr01G005049 |
| 描述 | mediator of RNA polymerase II transcription subunit 32 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68423403 - 68425871 / + |
| NCBI Gene ID | LOC131005431 |
|---|---|
| GeneID | 131005431 |
| locus_tag | - |
| NCBI Name | LOC131005431 |
| 原始查询 | SmilChr01G005049 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mediator of RNA polymerase II transcription subunit 32 |
| 产物 | mediator of RNA polymerase II transcription subunit 32 |
| Arabidopsis | AT1G11760 (MED32)mediator of RNA polymerase II transcription subunit-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837720] identity=65.1; qcov=1.05; evalue=2.5e-67; confidence=high |
| Rice | Os10g0548400- identity=68.6; qcov=0.814; evalue=8.39e-47; confidence=medium |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0009631 (cold acclimation); GO:0010150 (leaf senescence); GO:0016592 (mediator complex); GO:0048364 (root development) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005431 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788410.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057788409.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057788410.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788409.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68424292 |
G |
GC |
1bp_insertion | frameshift_variant | 172 | A1,A10,A11,A13,A14,A16,A18,A19,A20,A21,A23,A25,A3,A5,A6,A8,A9,B1,B10,B103,B105,B106,B107,B108,B109,B11,B110,B111,B115,B118,B119,B120,B122,B123,B125,B126,B127,B128,B129,B131,B134,B135,B137,B138,B139,B14,B140,B18,B2,B20,B21,B22,B24,B27,B28,B32,B34,B38,B39,B4,B40,B41,B42,B43,B45,B46,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B64,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B80,B84,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C14,C16,C17,C18,C19,C22,C23,C25,C26,C27,C28,C29,C3,C32,C33,C34,C39,C41,C42,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C54,C56,C57,C58,C60,C64,C66,C67,C68,C69,C7,C72,C73,C74,C75,C77,C78,C79,C81,C82,C85,C86,C87,C9,D1,D10,D3,D6,D7,D8 |
Chr1:68424294 |
CA |
C |
1bp_deletion | frameshift_variant | 172 | A1,A10,A11,A13,A14,A16,A18,A19,A20,A21,A23,A25,A3,A5,A6,A8,A9,B1,B10,B103,B105,B106,B107,B108,B109,B11,B110,B111,B115,B118,B119,B120,B122,B123,B125,B126,B127,B128,B129,B131,B134,B135,B137,B138,B139,B14,B140,B18,B2,B20,B21,B22,B24,B27,B28,B32,B34,B38,B39,B4,B40,B41,B42,B43,B45,B46,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B64,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B76,B77,B78,B79,B80,B84,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C14,C16,C17,C18,C19,C22,C23,C25,C26,C27,C28,C29,C3,C32,C33,C34,C39,C41,C42,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C54,C56,C57,C58,C60,C64,C66,C67,C68,C69,C7,C72,C73,C74,C75,C77,C78,C79,C81,C82,C85,C86,C87,C9,D1,D10,D3,D6,D7,D8 |
Chr1:68425302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:68425652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B68,B96,D2 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。