Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005050`

染色体: Chr01 坐标: 68447814-68451121 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005050`
名称	SmilChr01G005050
描述	uncharacterized SmilChr01G005050
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68447814 - 68451121 / `+`

ID 对照

NCBI Gene ID	`LOC131005415`
GeneID	`131005415`
locus_tag	`-`
NCBI Name	`LOC131005415`
原始查询	`SmilChr01G005050`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述	Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686]; symbol=LEW1; hit=AT1G11755; species=arabidopsis; confidence=high
产物	Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686]; symbol=LEW1; hit=AT1G11755; species=arabidopsis; confidence=high
Arabidopsis	`AT1G11755` (LEW1) Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686] identity=45; qcov=0.882; evalue=1.19e-69; confidence=high
Rice	`Os03g0197000` - identity=44; qcov=0.886; evalue=3.15e-64; confidence=medium
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0006486 (GO:0006486); GO:0019408 (GO:0019408); GO:0045547 (ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity); GO:1904423 (dehydrodolichyl diphosphate synthase complex)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131005415

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057788385.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057788385.1`
3	Nucleus membrane	核膜	0.40000	`XP_057788385.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057788385.1`
5	Nucleus	细胞核	0.00000	`XP_057788385.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68448334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr1:68449029`	`CTT`	`C`	2bp_deletion	frameshift_variant	4	B56,B68,B96,D2
`Chr1:68449029`	`CTT`	`C`	2bp_deletion	CDS_variant	4	B56,B68,B96,D2
`Chr1:68449094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B53
`Chr1:68449095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B108,B2,B53,C4
`Chr1:68449198`	`TG`	`T`	1bp_deletion	frameshift_variant	1	D4
`Chr1:68449198`	`TG`	`T`	1bp_deletion	CDS_variant	1	D4
`Chr1:68449246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr1:68449822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B66
`Chr1:68449847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr1:68450478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B56,B68,B96,D2,D4

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932402.1
ACCCTTCCTTTTTCTCATCTTTCCCCATAGTTGCACTGCTTCGTTTTCTTTCTTTCTTTTTTTCACACTCTTTATTTTTTTATTAAATCGGCGCGTGTAGCGCACGATTTTGCTAAAATCTGCCAACGACCCGCGTCTTGCCTTCGTCCCGGCTTCGACGTGCCCCGGTTCTCCAACGCGGCGTAGTAAGGAACAAACATTCTCAACGGGTAAACGAAGTCTCTCTCTCTCTCTCTCCTCTCTCACACAGTCACACTCAC...

XM_057932403.1
ACCCTTCCTTTTTCTCATCTTTCCCCATAGTTGCACTGCTTCGTTTTCTTTCTTTCTTTTTTTCACACTCTTTATTTTTTTATTAAATCGGCGCGTGTAGCGCACGATTTTGCTAAAATCTGCCAACGACCCGCGTCTTGCCTTCGTCCCGGCTTCGACGTGCCCCGGTTCTCCAACGCGGCGTAGTAAGGAACAAACATTCTCAACGGCTCCGAGATGCTGGAGATGGATTTCTTTCATCTGGCCACTTTCCTTCGCAG...

CDS

2 records

下载 CDS FASTA

LOC131005415
ATGCTGGAGATGGATTTCTTTCATCTGGCCACTTTCCTTCGCAGGATCGAATCAAAAGCTTTGGAATTAGGGGATCGGATGCAGAAGGGGTACAAAAGGATATGGTCGAGTGGCAGCCTTGGCCTTGGCCTTTACTTAATCTGGCTTATCATGCATCTGATTATGAGCGCATGGTACTTTGCCGTGGATTTGATGAACTCGCTTGAGAGCTATCTTATCTCCAGTGGTTTCCTGAAGCAGTATAAAGATCTTGACATCAG...

Protein

2 records

下载 Protein FASTA

XP_057788385.1
MLEMDFFHLATFLRRIESKALELGDRMQKGYKRIWSSGSLGLGLYLIWLIMHLIMSAWYFAVDLMNSLESYLISSGFLKQYKDLDISKVKYMAVVLDSEEALDTHNVLELLRWLATMGLRNVCLYDPEGVLKRSKDALSLWLRSEVKSNGTNRDPLVEQKYMNLEVISFTDGKHAVARAANFLLKKHYLNADGEKPELTESDMADALAAIGYAAPEPDLMLIYGPVRCHLGFPAWRLRYTEIVHMGPLKSMKFGAFIKAI...

XP_057788386.1
MLEMDFFHLATFLRRIESKALELGDRMQKGYKRIWSSGSLGLGLYLIWLIMHLIMSAWYFAVDLMNSLESYLISSGFLKQYKDLDISKVKYMAVVLDSEEALDTHNVLELLRWLATMGLRNVCLYDPEGVLKRSKDALSLWLRSEVKSNGTNRDPLVEQKYMNLEVISFTDGKHAVARAANFLLKKHYLNADGEKPELTESDMADALAAIGYAAPEPDLMLIYGPVRCHLGFPAWRLRYTEIVHMGPLKSMKFGAFIKAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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