Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005059`

染色体: Chr01 坐标: 68500613-68523773 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005059`
名称	SmilChr01G005059
描述	factor of DNA methylation 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68500613 - 68523773 / `+`

ID 对照

NCBI Gene ID	`LOC131005369`
GeneID	`131005369`
locus_tag	`-`
NCBI Name	`LOC131005369`
原始查询	`SmilChr01G005059`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	factor of DNA methylation 4-like
产物	factor of DNA methylation 4-like
Arabidopsis	`AT1G13790` (FDM4) XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837939] identity=44.3; qcov=1; evalue=5.51e-82; confidence=medium
Rice	`Os01g0126600` (OsFDML2) - identity=41.8; qcov=1.04; evalue=9.85e-82; confidence=medium
GO	GO:0080188 (gene silencing by siRNA-directed DNA methylation)
KEGG	-
Pfam	PF03468 (XS); PF03469 (XH)
InterPro	-
eggNOG	-
NR	GeneID:131005369

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788285.1`
2	Cytoplasm	细胞质	0.60000	`XP_057788285.1`
3	Cytosol	细胞质基质	0.40000	`XP_057788288.1`
4	Chromosome	染色体	0.00000	`XP_057788285.1`
5	Centromere	着丝粒	0.00000	`XP_057788285.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68501351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B36,B4,C36,D11
`Chr1:68501478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr1:68501511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501604`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	B33
`Chr1:68501604`	`ACT`	`A`	2bp_deletion	CDS_variant	1	B33
`Chr1:68501607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:68501609`	`A`	`ATC`	2bp_insertion	frameshift_variant	1	B33
`Chr1:68501609`	`A`	`ATC`	2bp_insertion	CDS_variant	1	B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788285.1

533 aa

266

533

PF03468 XS 19-128 aa PF03469 XH 399-531 aa

XP_057788287.1

531 aa

266

531

PF03468 XS 19-128 aa PF03469 XH 397-529 aa

XP_057788288.1

349 aa

174

349

PF03469 XH 215-347 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788285.1`	Pfam	`PF03468`	XS	Domain	19	128	7.1e-33	114.0	XS domain
`XP_057788285.1`	Pfam	`PF03469`	XH	Domain	399	531	3e-49	167.0	XH domain
`XP_057788287.1`	Pfam	`PF03468`	XS	Domain	19	128	7.1e-33	114.0	XS domain
`XP_057788287.1`	Pfam	`PF03469`	XH	Domain	397	529	3.3e-49	166.9	XH domain
`XP_057788288.1`	Pfam	`PF03469`	XH	Domain	215	347	1.3e-49	168.2	XH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932302.1
CAGAATGTATACCCTTTTCGTAATTATTACCAGCTAACCAATAGAGATCCGCCATGTGTCCACTTAAATTACTGAGAAAGGAAAAAGGAAAATGAACGGAATTTTGCAGACGGAGAAAAGGCGCAGAGACGCTCACTGTTACAGCCATGCATTGCAGCTGAGGCTCTCTCGCCCTCTCTGTCTCTCTCTGCTCAACTCTGTCGAAGAACCCTAAGACTTAAGTGCCGATTTCGCTTCTTTTTTTTCTTCTTCTCTGCGGC...

XM_057932304.1
AGAATGTATACCCTTTTCGTAATTATTACCAGCTAACCAATAGAGATCCGCCATGTGTCCACTTAAATTACTGAGAAAGGAAAAAGGAAAATGAACGGAATTTTGCAGACGGAGAAAAGGCGCAGAGACGCTCACTGTTACAGCCATGCATTGCAGCTGAGGCTCTCTCGCCCTCTCTGTCTCTCTCTGCTCAACTCTGTCGAAGAACCCTAAGACTTAAGTGCCGATTTCGCTTCTTTTTTTTCTTCTTCTCTGCGGCG...

CDS

3 records

下载 CDS FASTA

LOC131005369
ATGTCTGACTTATCGGAAGGGGATACTGATATAAGTGAGAGCTGTGACATGAATGAGCTCTATGTATGGCCATGGATGGGAGTCGTGGCAAACGTTCCTGTCCAGTGGAACGATGGGCGTTATGTTGGACAGAGTGGCTCGGTACTTAGGGATAAGCTAAGAAAGGAGGGGTTCAATCCTGTGAGGGTAATCCCTTTGTGGAACTTTAAGGGTCACTCTGGGTATGCAATAATAGAGTTTAAACGTGAGTGGCTCGGACT...

Protein

3 records

下载 Protein FASTA

XP_057788285.1
MSDLSEGDTDISESCDMNELYVWPWMGVVANVPVQWNDGRYVGQSGSVLRDKLRKEGFNPVRVIPLWNFKGHSGYAIIEFKREWLGLYDALRFEKAYEARHQGFRDYFGDEENAKKLYGWVARDGDFHSGNVVGDYLQKHGDLKSIGQCQKEEQIKNSKLLSQLENTIDAKNRNLKDMENKYKETSISLSSVISEKDEMVQAFNEERRKLQQSASDQLQKVLQDHGRITMELEVQRKKLEQEEQELEEREAQNENENLRL...

XP_057788287.1
MSDLSEGDTDISESCDMNELYVWPWMGVVANVPVQWNDGRYVGQSGSVLRDKLRKEGFNPVRVIPLWNFKGHSGYAIIEFKREWLGLYDALRFEKAYEARHQGFRDYFGDEENAKKLYGWVARDGDFHSGNVVGDYLQKHGDLKSIGQCQKEEQIKNSKLLSQLENTIDAKNRNLKDMENKYKETSISLSSVISEKDEMVQAFNEERRKLQQSASDQLQKVLQDHGRITMELEVQRKKLEQEEQELEEREAQNENENLRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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