Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005068`

染色体: Chr01 坐标: 68574525-68578601 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005068`
名称	SmilChr01G005068
描述	ADP,ATP carrier protein-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68574525 - 68578601 / `-`

ID 对照

NCBI Gene ID	`LOC131005400`
GeneID	`131005400`
locus_tag	`-`
NCBI Name	`LOC131005400`
原始查询	`SmilChr01G005068`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP,ATP carrier protein-like
产物	ADP%2CATP carrier protein-like
Arabidopsis	`AT5G13490` (AAC2) ADP/ATP carrier 2 [Source:NCBI gene (formerly Entrezgene);Acc:831193] identity=48.8; qcov=0.873; evalue=8.22e-84; confidence=high
Rice	`Os05g0302700` - identity=48.2; qcov=0.921; evalue=9.94e-86; confidence=high
GO	GO:0005471 (ATP:ADP antiporter activity); GO:0005743 (mitochondrial inner membrane); GO:0140021 (mitochondrial ADP transmembrane transport); GO:1990544 (mitochondrial ATP transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131005400

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057788352.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057788352.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057788355.1`
4	Nucleus	细胞核	0.00000	`XP_057788352.1`
5	Chromosome	染色体	0.00000	`XP_057788352.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68574839`	`C`	`CAA`	2bp_insertion	frameshift_variant	1	D7
`Chr1:68574839`	`C`	`CAA`	2bp_insertion	CDS_variant	1	D7
`Chr1:68574921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:68574932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B66,C46,C8,D6
`Chr1:68574976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B87,C22
`Chr1:68575001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr1:68575011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B133
`Chr1:68575032`	`C`	`CAA`	2bp_insertion	frameshift_variant	11	B100,B122,B32,B72,B73,B75,C14,C41,C64,C66,C9
`Chr1:68575039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:68575382`	`A`	`AT`	1bp_insertion	frameshift_variant	2	C5,D11
`Chr1:68575382`	`A`	`AT`	1bp_insertion	CDS_variant	2	C5,D11
`Chr1:68575453`	`AT`	`A`	1bp_deletion	frameshift_variant	47	A14,A16,A20,A25,A4,B10,B102,B105,B107,B112,B114,B125,B126,B135,B15,B17,B3,B32,B46,B54,B59,B61,B62,B64,B68,B71,B74,B85,B86,B90,B92,C17,C35,C38,C42,C45,C52,C63,C65,C67,C70,C71,C73,C77,C86,D10,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788352.1

350 aa

175

350

Mito_carr

PF00153 Mito_carr 44-126 aa PF00153 Mito_carr 144-230 aa

XP_057788353.1

350 aa

175

350

Mito_carr

PF00153 Mito_carr 44-126 aa PF00153 Mito_carr 144-230 aa

XP_057788354.1

338 aa

169

338

Mito_carr

PF00153 Mito_carr 32-114 aa PF00153 Mito_carr 132-218 aa

XP_057788355.1

331 aa

166

331

Mito_carr

PF00153 Mito_carr 32-115 aa PF00153 Mito_carr 130-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788352.1`	Pfam	`PF00153`	Mito_carr	Repeat	44	126	3.7e-42	142.7	Mitochondrial carrier protein
`XP_057788352.1`	Pfam	`PF00153`	Mito_carr	Repeat	144	230	3.7e-42	142.7	Mitochondrial carrier protein
`XP_057788353.1`	Pfam	`PF00153`	Mito_carr	Repeat	44	126	3.7e-42	142.7	Mitochondrial carrier protein
`XP_057788353.1`	Pfam	`PF00153`	Mito_carr	Repeat	144	230	3.7e-42	142.7	Mitochondrial carrier protein
`XP_057788354.1`	Pfam	`PF00153`	Mito_carr	Repeat	32	114	1.1e-42	144.3	Mitochondrial carrier protein
`XP_057788354.1`	Pfam	`PF00153`	Mito_carr	Repeat	132	218	1.1e-42	144.3	Mitochondrial carrier protein
`XP_057788355.1`	Pfam	`PF00153`	Mito_carr	Repeat	32	115	1.2e-42	144.2	Mitochondrial carrier protein
`XP_057788355.1`	Pfam	`PF00153`	Mito_carr	Repeat	130	219	1.2e-42	144.2	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057932371.1
TTTCAAAATTATTATGCGCTGTCTTCCTCTGGATTACGTCTATCTTGTAGAACTTGATCTGTTTTGATTTGCAGGGAAAAGAAATGAGCATGAGTCAACATTCGGGAGCATCTGTGGTGAAGTCTGATGGTTTTGTGCAAGACAAGAGATTTGTGGGGCTGTCTTATCTGACGGGTGTGGCGGTCTGTAAAACCGCTACTGCTCCTTTTGATCGTGTGAAACTTTTGATGCAAAACGAGGGTGCAATAGTCATGTCGGGT...

XM_057932369.1
ATTTGTTCTAGATAAATGTACTTCTTGACTCGTTAATTCATTATGTGTTTTTCTGTGACCGACTATTATTCAGGTCGTAGACGAGAAACATCGAAAACCAAATTAGCAAGAAACATGAAGCATATATAGACACAACTTATCGAATGGCTCCAAAATACTAGTAATAAATTATGCATTTGATGTTCTGAATTTCGAGCCACAATATATAGTATTAGGAAAGTAACTATATGAGCTGCATTGGTCAGTGAATTTTGAAAAAA...

CDS

4 records

下载 CDS FASTA

LOC131005400
ATGAGCATGAGTCAACATTCGGGAGCATCTGTGGTGAAGTCTGATGGTTTTGTGCAAGACAAGAGATTTGTGGGGCTGTCTTATCTGACGGGTGTGGCGGTCTGTAAAACCGCTACTGCTCCTTTTGATCGTGTGAAACTTTTGATGCAAAACGAGGGTGCAATAGTCATGTCGGGTAGGTTATCTGCACCATACAAAGGCATCCGCAACTGTTTGTGGAGAACAGTAATGGAAGAAGGAGTTGCCTCTTTGTGGAGAGG...

LOC131005400
ATGAGTATGGATGAGACTCCCATGACTCAACATTTGGGAGGGAACTCTGCATTGGCATATCCATCTGTGGAGAAATCTGGTGATTTTGTGCAATACAACAGATTTGTGGGCTTGTCTTATCTGACGGGTGTGGCAGTTTGTAAAACCGCTATTGCTCCTATTGATCGTGTGAAACTTTTGATGCAAAACGAGGGTGCAATAGTCATGTCGGGTAGGTTATCTGCACCATACAAAGGCATCCGCAACTGTTTGTGGAGAAC...

Protein

4 records

下载 Protein FASTA

XP_057788352.1
MSMDETPMTQHLGGNSALAYPSVEKSGDFVQYNRFVGLSYLTGVAVCKTAIAPIDRVKLLMQNEGAIVMSGRLSAPYKGIRNCLWRTVMEEGVASLWRGNTLNVIRYLPSQALTFGMWDFYKSKIISRGDSKDTVGLLGWHAMNVAAGVLAGSSSILFVHPMDYVRTRLAMDVKMGGARQFKGSLDLCKKTLAADGVVGFYCGFTQSFMGAAVYRGLYFGMYETLKPFVLTGEMQDSFFGRFGVAWVSAIFAGSASYAPD...

XP_057788353.1
MSMDETPMTQHLGGNSALAYPSVEKSGDFVQYNRFVGLSYLTGVAVCKTAIAPIDRVKLLMQNEGAIVMSGRLSAPYKGIRNCLWRTVMEEGVASLWRGNTLNVIRYLPSQALTFGMWDFYKSKIISRGDSKDTVGLLGWHAMNVAAGVLAGSSSILFVHPMDYVRTRLAMDVKMGGARQFKGSLDLCKKTLAADGVVGFYCGFTQSFMGAAVYRGLYFGMYETLKPFVLTGEMQDSFFGRFGVAWVSAIFAGSASYAPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器