Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005069`

染色体: Chr01 坐标: 68580824-68582934 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005069`
名称	SmilChr01G005069
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68580824 - 68582934 / `+`

ID 对照

NCBI Gene ID	`LOC131005361`
GeneID	`131005361`
locus_tag	`-`
NCBI Name	`LOC131005361`
原始查询	`SmilChr01G005069`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=37.9; qcov=0.918; evalue=8.44e-132; confidence=medium
Rice	`Os08g0110200` (Rf6) - identity=31.1; qcov=0.854; evalue=1.93e-76; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131005361

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057788275.1`
2	Chloroplast	叶绿体	0.40000	`XP_057788275.1`
3	Nucleus	细胞核	0.00000	`XP_057788275.1`
4	Chromosome	染色体	0.00000	`XP_057788275.1`
5	Centromere	着丝粒	0.00000	`XP_057788275.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68581007`	`T`	`TAA`	2bp_insertion	frameshift_variant	14	A1,A7,B104,B131,B140,B19,B30,B42,B47,B80,B99,C65,D2,D6
`Chr1:68581014`	`TC`	`T`	1bp_deletion	frameshift_variant	4	C13,C39,C83,D6
`Chr1:68581014`	`TC`	`T`	1bp_deletion	CDS_variant	4	C13,C39,C83,D6
`Chr1:68581024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr1:68581053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B5,B53,B70
`Chr1:68581064`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C37
`Chr1:68581064`	`TC`	`T`	1bp_deletion	CDS_variant	1	C37
`Chr1:68581074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C13,C39,C83,D6
`Chr1:68581075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr1:68581081`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B105
`Chr1:68581081`	`TC`	`T`	1bp_deletion	CDS_variant	1	B105
`Chr1:68581121`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B126,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788275.1

595 aa

298

595

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR

PPR_1

PPR_2

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PF13041 PPR_2 92-140 aa PF13812 PPR_3 158-204 aa PF12854 PPR_1 159-191 aa PF13041 PPR_2 162-208 aa PF01535 PPR 165-190 aa PF12854 PPR_1 192-211 aa PF01535 PPR 197-223 aa PF13812 PPR_3 223-273 aa PF12854 PPR_1 227-255 aa PF13041 PPR_2 230-278 aa PF01535 PPR 234-255 aa PF12854 PPR_1 262-293 aa PF01535 PPR 268-295 aa PF13041 PPR_2 268-313 aa PF13812 PPR_3 288-346 aa PF12854 PPR_1 297-327 aa PF01535 PPR 302-328 aa PF12854 PPR_1 333-360 aa PF13041 PPR_2 334-383 aa PF01535 PPR 338-361 aa PF01535 PPR 375-400 aa PF13041 PPR_2 375-417 aa PF13812 PPR_3 399-448 aa PF12854 PPR_1 400-433 aa PF13041 PPR_2 404-452 aa PF01535 PPR 407-433 aa PF17177 PPR_long 422-551 aa PF12854 PPR_1 437-468 aa PF13041 PPR_2 439-488 aa PF01535 PPR 442-472 aa PF23276 TPR_24 443-505 aa PF13812 PPR_3 460-484 aa PF12854 PPR_1 471-501 aa PF13041 PPR_2 474-523 aa PF01535 PPR 477-507 aa PF13812 PPR_3 498-552 aa PF12854 PPR_1 505-538 aa PF13041 PPR_2 511-557 aa PF01535 PPR 512-542 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	92	140	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	158	204	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	159	191	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	162	208	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	165	190	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	192	211	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	197	223	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	223	273	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	227	255	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	230	278	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	234	255	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	262	293	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	268	295	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	268	313	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	288	346	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	297	327	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	302	328	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	333	360	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	334	383	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	338	361	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	375	400	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	375	417	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	399	448	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	400	433	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	404	452	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	407	433	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF17177`	PPR_long	Repeat	422	551	1.5e-22	80.7	Pentacotripeptide-repeat region of PRORP
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	437	468	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	439	488	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	442	472	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF23276`	TPR_24	Repeat	443	505	7.1e-24	84.9	Pentatricopeptide repeat-containing protein
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	460	484	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	471	501	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	474	523	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	477	507	1.5e-77	251.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13812`	PPR_3	Repeat	498	552	4.1e-51	171.6	Pentatricopeptide repeat domain
`XP_057788275.1`	Pfam	`PF12854`	PPR_1	Repeat	505	538	4.1e-102	334.3	PPR repeat
`XP_057788275.1`	Pfam	`PF13041`	PPR_2	Repeat	511	557	4.3e-128	418.1	PPR repeat family
`XP_057788275.1`	Pfam	`PF01535`	PPR	Repeat	512	542	1.5e-77	251.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932292.1
CGAAACAAAATAGTGGAACAAATTCATGCGCATTTGGCCTTTCATCCGAAGAAAAAGAACCCCCTCCCCCCCAAACATAAAGAAATCCACTCGAGAATATTCGAATCTCGCTTGCTGCCATGGATTTGGAAAGAATTACGTTCAATTCTTCATTCAAATCTTTCAGTTTTGACATTGCTTCTCTAAGTTTTCACTCATTTCCTGTACCCAGATCTAATTTTCGTAATGTCAGCCACAAAATCCAAATGCGGCACTCTTCC...

CDS

1 records

下载 CDS FASTA

LOC131005361
ATGGATTTGGAAAGAATTACGTTCAATTCTTCATTCAAATCTTTCAGTTTTGACATTGCTTCTCTAAGTTTTCACTCATTTCCTGTACCCAGATCTAATTTTCGTAATGTCAGCCACAAAATCCAAATGCGGCACTCTTCCCGCAAACCCAGATCCAAAATCAGCCACCAAACAAGGCACTTTTCCCGCGAACCCAGGTTCGATTTCGGATCTATTCGGGAGCCAGATGATGCTATCGCTCTATTTCAGGAAATGGTGAG...

Protein

1 records

下载 Protein FASTA

XP_057788275.1
MDLERITFNSSFKSFSFDIASLSFHSFPVPRSNFRNVSHKIQMRHSSRKPRSKISHQTRHFSREPRFDFGSIREPDDAIALFQEMVRIHPRPCVIDFNRLLSAVVKMKQYSVALHLFVKMLASDIPVDRYTLNIAINCCCGLKRPGCGFAILGSFFKLGHEPDAVTFTTLIKGLMLVGKIVEAAKLFEKMSVEANAVTYNTVINGLCKAGHTLQVLDLLRLWERGSCKLDVIGYNTIIYHLCKNGMVDDALQLFSTLADK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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