Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005071`

染色体: Chr01 坐标: 68590309-68591133 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005071`
名称	SmilChr01G005071
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68590309 - 68591133 / `+`

ID 对照

NCBI Gene ID	`LOC131012110`
GeneID	`131012110`
locus_tag	`-`
NCBI Name	`LOC131012110`
原始查询	`SmilChr01G005071`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=31; qcov=0.854; evalue=1.1e-18; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=26.4; qcov=0.918; evalue=2.38e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:131012110

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057796008.1`
2	Cytoplasm	细胞质	0.60000	`XP_057796008.1`
3	Cytosol	细胞质基质	0.20000	`XP_057796008.1`
4	Chromosome	染色体	0.00000	`XP_057796008.1`
5	Centromere	着丝粒	0.00000	`XP_057796008.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68590477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr1:68590533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:68590575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B13,B82,C76
`Chr1:68590578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr1:68590671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,C59
`Chr1:68590680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:68590681`	`ACT`	`A`	2bp_deletion	frameshift_variant	4	B1,B139,B7,B89
`Chr1:68590681`	`ACT`	`A`	2bp_deletion	CDS_variant	4	B1,B139,B7,B89
`Chr1:68590688`	`C`	`CT`	1bp_insertion	frameshift_variant	74	A1,A11,A15,A22,A24,B108,B11,B111,B126,B131,B134,B139,B14,B140,B19,B2,B27,B28,B3,B37,B41,B44,B45,B47,B53,B56,B57,B60,B61,B62,B66,B70,B72,B76,B83,B85,B89,B97,B98,B99,C1,C10,C16,C21,C22,C23,C28,C34,C38,C42,C48,C5,C51,C54,C55,C57,C58,C59,C6,C62,C67,C69,C7,C70,C71,C79,C8,C83,C84,C86,C87,D3,D6,D8
`Chr1:68590691`	`TA`	`T`	1bp_deletion	frameshift_variant	82	A1,A11,A15,A22,A24,A3,A5,B108,B11,B111,B126,B131,B133,B134,B139,B14,B140,B19,B2,B27,B28,B3,B37,B41,B44,B45,B47,B53,B56,B57,B60,B61,B62,B66,B70,B71,B72,B76,B83,B85,B88,B89,B97,B98,B99,C1,C10,C16,C19,C21,C22,C23,C25,C28,C30,C34,C38,C42,C43,C45,C48,C5,C51,C54,C57,C58,C59,C6,C62,C67,C69,C7,C70,C71,C79,C8,C83,C84,C86,D3,D6,D8
`Chr1:68590933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B121,C49,C63,C87,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796008.1

219 aa

110

219

F-box

F-box-like

b-prop_At3g26010-like

FBA_1

PF00646 F-box 28-65 aa PF12937 F-box-like 29-63 aa PF24750 b-prop_At3g26010-like 106-195 aa PF07734 FBA_1 110-215 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796008.1`	Pfam	`PF00646`	F-box	Domain	28	65	6.9e-08	32.8	F-box domain
`XP_057796008.1`	Pfam	`PF12937`	F-box-like	Domain	29	63	9.9e-07	29.1	F-box-like
`XP_057796008.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	106	195	7.4e-06	26.0	F-box protein At3g26010-like, beta-propeller
`XP_057796008.1`	Pfam	`PF07734`	FBA_1	Repeat	110	215	4.7e-14	52.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940025.1
CCCTGCAGATGAAGCGGGCTACTGTGTTCATATACTGCAAAATGTAGAGGAAAAAGTAACGTACTGTTGCAGAGCATCACTCACGCTTCGTCTGCGCTCCAATCTCTCTCTCCCAAAACCCTCACAAAACCCTCCTCCACACTTGGCTTGTTCACATAATCAAAAATGCCTCCGAAAAGAAACCCCAATCGCTCCAAATCCAGCAACAACGCAGCGGTGGAGATCGACGCCATGGCCGACTGCTTGTTTCCTCGCGACAT...

CDS

1 records

下载 CDS FASTA

LOC131012110
ATGCCTCCGAAAAGAAACCCCAATCGCTCCAAATCCAGCAACAACGCAGCGGTGGAGATCGACGCCATGGCCGACTGCTTGTTTCCTCGCGACATTATGATCGCCATTTTGACGCGACTGCCCGTGAAATCTCTCTTCCGATTCAGGTGTGTCTGCAAGCCCTGGAGCGGCCTCGTCTTCAACCCGAGCTTCATAAAGCTCCACACCACTCTCTCTCTAGAATCCCCGAGACCGAGAGCTGCTCAAACCCATCTCCTCAA...

Protein

1 records

下载 Protein FASTA

XP_057796008.1
MPPKRNPNRSKSSNNAAVEIDAMADCLFPRDIMIAILTRLPVKSLFRFRCVCKPWSGLVFNPSFIKLHTTLSLESPRPRAAQTHLLNCPVLSVHPNRVAPSDAADLWLDHCNGMVCMTRPSYTQKIVLWNPATNLWKILPDSTVRFGAAQMVSLGFGCNADGDDFKVVRIACMKGRKMKTVVEVYSSKSGSWRTIEDVGFKFTVMYPKNHVIVNGDQNH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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