Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005072`

染色体: Chr01 坐标: 68599787-68603091 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005072`
名称	SmilChr01G005072
描述	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68599787 - 68603091 / `+`

ID 对照

NCBI Gene ID	`LOC131005423`
GeneID	`131005423`
locus_tag	`-`
NCBI Name	`LOC131005423`
原始查询	`SmilChr01G005072`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
产物	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8%2C mitochondrial
Arabidopsis	`AT1G79010` (AT1G79010) Alpha-helical ferredoxin [Source:NCBI gene (formerly Entrezgene);Acc:844242] identity=85.1; qcov=1; evalue=3.39e-143; confidence=high
Rice	`Os03g0774200` - identity=82.5; qcov=0.93; evalue=2.69e-127; confidence=high
GO	GO:0003954 (NADH dehydrogenase activity); GO:0005747 (GO:0005747); GO:0006120 (mitochondrial electron transport, NADH to ubiquinone); GO:0016020 (membrane); GO:0032981 (mitochondrial respiratory chain complex I assembly); GO:0045272 (GO:0045272); GO:0051539 (4 iron, 4 sulfur cluster binding)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00037 (Fer4); PF12800 (Fer4_4); PF12838 (Fer4_7); PF13187 (Fer4_9); PF13237 (Fer4_10)
InterPro	-
eggNOG	-
NR	GeneID:131005423

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057788398.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057788398.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057788398.1`
4	Nucleus	细胞核	0.00000	`XP_057788398.1`
5	Chromosome	染色体	0.00000	`XP_057788398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68600526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr1:68600529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr1:68600555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr1:68601562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr1:68601577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr1:68602686`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B140,C15,C21
`Chr1:68602725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,B78,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788398.1

234 aa

117

234

Fer4

Fer4_10

Fer4_4

Fer4_7

Fer4_9

Fer4

Fer4_4

PF00037 Fer4 126-145 aa PF13237 Fer4_10 126-179 aa PF12800 Fer4_4 127-141 aa PF12838 Fer4_7 128-182 aa PF13187 Fer4_9 128-183 aa PF00037 Fer4 162-183 aa PF12800 Fer4_4 166-180 aa

XP_057788399.1

228 aa

114

228

Fer4

Fer4_10

Fer4_4

Fer4_7

Fer4_9

Fer4

Fer4_4

PF00037 Fer4 126-145 aa PF13237 Fer4_10 126-179 aa PF12800 Fer4_4 127-141 aa PF12838 Fer4_7 128-182 aa PF13187 Fer4_9 128-183 aa PF00037 Fer4 162-183 aa PF12800 Fer4_4 166-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788398.1`	Pfam	`PF00037`	Fer4	Domain	126	145	3.3e-14	52.7	4Fe-4S binding domain
`XP_057788398.1`	Pfam	`PF13237`	Fer4_10	Domain	126	179	6.5e-07	29.9	4Fe-4S dicluster domain
`XP_057788398.1`	Pfam	`PF12800`	Fer4_4	Domain	127	141	2.6e-05	24.9	4Fe-4S binding domain
`XP_057788398.1`	Pfam	`PF12838`	Fer4_7	Domain	128	182	9.1e-13	49.2	4Fe-4S dicluster domain
`XP_057788398.1`	Pfam	`PF13187`	Fer4_9	Family	128	183	7.7e-08	33.0	4Fe-4S dicluster domain
`XP_057788398.1`	Pfam	`PF00037`	Fer4	Domain	162	183	3.3e-14	52.7	4Fe-4S binding domain
`XP_057788398.1`	Pfam	`PF12800`	Fer4_4	Domain	166	180	2.6e-05	24.9	4Fe-4S binding domain
`XP_057788399.1`	Pfam	`PF00037`	Fer4	Domain	126	145	3.3e-14	52.7	4Fe-4S binding domain
`XP_057788399.1`	Pfam	`PF13237`	Fer4_10	Domain	126	179	6.9e-07	29.8	4Fe-4S dicluster domain
`XP_057788399.1`	Pfam	`PF12800`	Fer4_4	Domain	127	141	3.3e-05	24.6	4Fe-4S binding domain
`XP_057788399.1`	Pfam	`PF12838`	Fer4_7	Domain	128	182	1e-12	49.0	4Fe-4S dicluster domain
`XP_057788399.1`	Pfam	`PF13187`	Fer4_9	Family	128	183	8.7e-08	32.8	4Fe-4S dicluster domain
`XP_057788399.1`	Pfam	`PF00037`	Fer4	Domain	162	183	3.3e-14	52.7	4Fe-4S binding domain
`XP_057788399.1`	Pfam	`PF12800`	Fer4_4	Domain	166	180	3.3e-05	24.6	4Fe-4S binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932416.1
ATAGTAAATAAATTGATTAATTACAAAATATTACACCAAAACGAACCGACTATAAACAAACGCACGAGCTTTCGCGGACAGCGGCACTTCACTTTCTGATCGTGAATTTGGCCATTTGGGAACGAAAATCTGCAACTGAGAGGAAATGGCTTCCATCTTAGCTCGCAAATCCCTATCTGCTCTTCGCGCTCGCCAGCTCGCTCTGGCAGGGCAAGCATTGCAGGGCTCTGCTCGTATCGGGACTATTTACCCTGAGCGCA...

XM_057932415.1
CAAAATATTACACCAAAACGAACCGACTATAAACAAACGCACGAGCTTTCGCGGACAGCGGCACTTCACTTTCTGATCGTGAATTTGGCCATTTGGGAACGAAAATCTGCAACTGAGAGGAAATGGCTTCCATCTTAGCTCGCAAATCCCTATCTGCTCTTCGCGCTCGCCAGCTCGCTCTGGCAGGGCAAGCATTGCAGGGCTCTGCTCGTATCGGGACTATTTACCCTGAGCGCACATTTGCCACAAAACATTCATTC...

CDS

2 records

下载 CDS FASTA

LOC131005423
ATGGCTTCCATCTTAGCTCGCAAATCCCTATCTGCTCTTCGCGCTCGCCAGCTCGCTCTGGCAGGGCAAGCATTGCAGGGCTCTGCTCGTATCGGGACTATTTACCCTGAGCGCACATTTGCCACAAAACATTCATTCTCTAACGACAAGGATGATGAAGAAAGAGAGAAGCTTGTAAGGGAGATATCTAAAGATTGGAGTTCTGTTTTTGAGAGGAGCATTAACACATTATTCCTCACTGAAATGGTTAGAGGTCTGAT...

Protein

2 records

下载 Protein FASTA

XP_057788398.1
MASILARKSLSALRARQLALAGQALQGSARIGTIYPERTFATKHSFSNDKDDEEREKLVREISKDWSSVFERSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEVSTNIFFTCYAMSTEKMYGLITNFACTRNFSTTRRSC

XP_057788399.1
MASILARKSLSALRARQLALAGQALQGSARIGTIYPERTFATKHSFSNDKDDEEREKLVREISKDWSSVFERSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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