当前解析结果
SmilChr01G005073| 统一新 Gene ID | SmilChr01G005073 |
|---|---|
| 名称 | SmilChr01G005073 |
| 描述 | phenylalanine--tRNA ligase alpha subunit, cytoplasmic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 68604447 - 68611572 / + |
| NCBI Gene ID | LOC131005378 |
|---|---|
| GeneID | 131005378 |
| locus_tag | - |
| NCBI Name | LOC131005378 |
| 原始查询 | SmilChr01G005073 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phenylalanine--tRNA ligase alpha subunit, cytoplasmic |
| 产物 | phenylalanine--tRNA ligase alpha subunit%2C cytoplasmic |
| Arabidopsis | AT4G39280 (AT4G39280)phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:830084] identity=73.8; qcov=1; evalue=0; confidence=high |
| Rice | Os10g0400800- identity=65.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000049 (tRNA binding); GO:0004826 (phenylalanine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006432 (phenylalanyl-tRNA aminoacylation); GO:0009328 (phenylalanine-tRNA ligase complex) |
| KEGG | smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01409 (tRNA-synt_2d); PF18552 (PheRS_DBD1); PF18553 (PheRS_DBD3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005378 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788307.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057788307.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788307.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788307.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788307.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:68604741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C38 |
Chr1:68605154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B140,C15,C21,D2 |
Chr1:68605302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B29,C27,C30,C83 |
Chr1:68606102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C58 |
Chr1:68607065 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:68607112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C38 |
Chr1:68608372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B65,C27,C30,C83 |
Chr1:68609210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B12,C58 |
Chr1:68610669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C7 |
Chr1:68610790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:68610806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C38 |
Chr1:68611080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B140,C15,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788307.1PF18552
PheRS_DBD1 3-56 aa
PF18553
PheRS_DBD3 70-137 aa
PF01409
tRNA-synt_2d 213-486 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788307.1 |
Pfam | PF18552 |
PheRS_DBD1 | Domain | 3 | 56 | 1.2e-08 | 35.3 | PheRS DNA binding domain 1 |
XP_057788307.1 |
Pfam | PF18553 |
PheRS_DBD3 | Domain | 70 | 137 | 1.1e-07 | 32.7 | PheRS DNA binding domain 3 |
XP_057788307.1 |
Pfam | PF01409 |
tRNA-synt_2d | Domain | 213 | 486 | 3.8e-90 | 302.4 | tRNA synthetases class II core domain (F) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。