Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005081`

染色体: Chr01 坐标: 68671744-68677446 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005081`
名称	SmilChr01G005081
描述	probable LRR receptor-like serine/threonine-protein kinase At2g16250
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68671744 - 68677446 / `-`

ID 对照

NCBI Gene ID	`LOC131005345`
GeneID	`131005345`
locus_tag	`-`
NCBI Name	`LOC131005345`
原始查询	`SmilChr01G005081`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At2g16250
产物	probable LRR receptor-like serine/threonine-protein kinase At2g16250
Arabidopsis	`AT2G16250` (AT2G16250) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816121] identity=59.8; qcov=0.92; evalue=0; confidence=high
Rice	`Os03g0724300` - identity=51.5; qcov=0.785; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0009755 (hormone-mediated signaling pathway)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131005345

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057788249.1`
2	Nucleus	细胞核	0.00000	`XP_057788249.1`
3	Chromosome	染色体	0.00000	`XP_057788249.1`
4	Centromere	着丝粒	0.00000	`XP_057788249.1`
5	Chromatin	染色质	0.00000	`XP_057788249.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68672163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:68672246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B114,B3,C37,C38
`Chr1:68672252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B26,C40,C71
`Chr1:68672258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C5
`Chr1:68672278`	`AC`	`A`	1bp_deletion	frameshift_variant	2	B136,B16
`Chr1:68672278`	`AC`	`A`	1bp_deletion	CDS_variant	2	B136,B16
`Chr1:68672329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr1:68672330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C5
`Chr1:68672339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B94,C16,C74
`Chr1:68672414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B114,B3,C37,C38
`Chr1:68672415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B114,B3,C37,C38
`Chr1:68672423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788249.1

908 aa

454

908

LRRNT_2

LRR_1

LRR_14

LRR_8

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 33-68 aa PF00560 LRR_1 127-149 aa PF23598 LRR_14 127-330 aa PF13855 LRR_8 172-210 aa PF00560 LRR_1 176-197 aa PF00560 LRR_1 199-221 aa PF00560 LRR_1 224-245 aa PF00560 LRR_1 321-338 aa PF07714 PK_Tyr_Ser-Thr 529-800 aa PF00069 Pkinase 530-799 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788249.1`	Pfam	`PF08263`	LRRNT_2	Family	33	68	1.4e-05	26.0	Leucine rich repeat N-terminal domain
`XP_057788249.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	1.6e-23	78.4	Leucine Rich Repeat
`XP_057788249.1`	Pfam	`PF23598`	LRR_14	Repeat	127	330	2.7e-13	50.1	Leucine-rich repeat region
`XP_057788249.1`	Pfam	`PF13855`	LRR_8	Repeat	172	210	4.8e-20	71.8	Leucine rich repeat
`XP_057788249.1`	Pfam	`PF00560`	LRR_1	Repeat	176	197	1.6e-23	78.4	Leucine Rich Repeat
`XP_057788249.1`	Pfam	`PF00560`	LRR_1	Repeat	199	221	1.6e-23	78.4	Leucine Rich Repeat
`XP_057788249.1`	Pfam	`PF00560`	LRR_1	Repeat	224	245	1.6e-23	78.4	Leucine Rich Repeat
`XP_057788249.1`	Pfam	`PF00560`	LRR_1	Repeat	321	338	1.6e-23	78.4	Leucine Rich Repeat
`XP_057788249.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	529	800	3.8e-19	69.7	Protein tyrosine and serine/threonine kinase
`XP_057788249.1`	Pfam	`PF00069`	Pkinase	Domain	530	799	6.8e-12	46.1	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932266.1
GAACTCCAATTTCATTAAACCCAAAAAAGAAAAATCTAAAGAGCATCAAATGCACAACTACATGAGCGAGAAAGTACAATGATTCGTGGCCGAAGAAGCTCAGTCACCGCAGTAAGGTATAGATCCATCCGACGTCGTCTCGAGCACACTTAGTCTCGGAATCCGAATTCGCGATCCATATTCAAACACGACCCGACCCGTCAGAAGCTGTATCAGGCACCGCCGGCGAGTGTTGCAAAGTTGAAGAGAGAGAAAGAGAT...

CDS

1 records

下载 CDS FASTA

LOC131005345
ATGGTGGATCGGTGGAGCAGAGTAGTTTACATTTGTTCAACTTTGTTGTTTTTGCTGTTTGGTTGCACAGTTGAGCAGCAATTCCTGATTTCTAGGCAGGAGAGATTGGCTCTGCTTCAGTTGAGATCTTCATTAGGGTTGAGGACTAGGGAGTGGCCGATAAAATCCGACCCGTGCACTAATTGGGTCGGTATCCAATGCAGCAACGGCAGCGTTTCGGGAATCAACATCTCAGGGTTCAGGAGAACTAAGAGGGGAAG...

Protein

1 records

下载 Protein FASTA

XP_057788249.1
MVDRWSRVVYICSTLLFLLFGCTVEQQFLISRQERLALLQLRSSLGLRTREWPIKSDPCTNWVGIQCSNGSVSGINISGFRRTKRGSQNPRFSVDALRNLTLLASFNASNFALPGPIPEWLGLGVASLRVLDLRSCLINGSIPSTLGNLSSLVELYLSSNALDGALPMSLGQLDGLSVLDLSRNALTGLIPVAFGDLRNLTVLDLSLNHLSGEIPPGIGTLSMLRVLNLSGNSLSSSIPPQLGDLSSLVDLDLGFNSLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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