Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005121`

染色体: Chr01 坐标: 69017618-69022027 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005121`
名称	SmilChr01G005121
描述	chaperone protein dnaJ 10-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69017618 - 69022027 / `+`

ID 对照

NCBI Gene ID	`LOC131005404`
GeneID	`131005404`
locus_tag	`-`
NCBI Name	`LOC131005404`
原始查询	`SmilChr01G005121`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein dnaJ 10-like
产物	chaperone protein dnaJ 10-like
Arabidopsis	`AT4G39150` (AT4G39150) DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830070] identity=54.4; qcov=0.963; evalue=3.4e-108; confidence=high
Rice	`Os05g0543700` (OsDjC51) - identity=52.1; qcov=0.959; evalue=2.64e-101; confidence=high
GO	-
KEGG	-
Pfam	PF00226 (DnaJ); PF14308 (DnaJ-X)
InterPro	-
eggNOG	-
NR	GeneID:131005404

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788362.1`
2	Cytosol	细胞质基质	1.00000	`XP_057788367.1`
3	Mitochondrion	线粒体	0.80000	`XP_057788359.1`
4	Mitochondrion membrane	线粒体膜	0.20000	`XP_057788364.1`
5	Nucleus	细胞核	0.00000	`XP_057788362.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69018362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,C23
`Chr1:69018367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B32,B47,C45,C49,C66
`Chr1:69018372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B104,B11,B8,C31
`Chr1:69018379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,C23
`Chr1:69018410`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	10	B110,B117,B32,B33,B47,B48,B71,C64,C79,D5
`Chr1:69018428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C31
`Chr1:69018435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C31
`Chr1:69020373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B61,B64
`Chr1:69020485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,C1,C8,C82
`Chr1:69020740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B123,B2,B65
`Chr1:69020945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B123,B65
`Chr1:69020992`	`T`	`TC`	1bp_insertion	frameshift_variant	2	B119,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788359.1

343 aa

172

343

DnaJ

DnaJ-X

PF00226 DnaJ 9-72 aa PF14308 DnaJ-X 138-316 aa

XP_057788360.1

343 aa

172

343

DnaJ

DnaJ-X

PF00226 DnaJ 9-72 aa PF14308 DnaJ-X 138-316 aa

XP_057788361.1

343 aa

172

343

DnaJ

DnaJ-X

PF00226 DnaJ 9-72 aa PF14308 DnaJ-X 138-316 aa

XP_057788362.1

324 aa

162

324

DnaJ

DnaJ-X

PF00226 DnaJ 9-72 aa PF14308 DnaJ-X 138-317 aa

XP_057788364.1

322 aa

161

322

DnaJ

DnaJ-X

PF00226 DnaJ 12-51 aa PF14308 DnaJ-X 117-295 aa

XP_057788365.1

315 aa

158

315

DnaJ

DnaJ-X

PF00226 DnaJ 4-44 aa PF14308 DnaJ-X 110-288 aa

XP_057788366.1

303 aa

152

303

DnaJ

DnaJ-X

PF00226 DnaJ 12-51 aa PF14308 DnaJ-X 117-296 aa

XP_057788367.1

296 aa

148

296

DnaJ

DnaJ-X

PF00226 DnaJ 4-44 aa PF14308 DnaJ-X 110-289 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788359.1`	Pfam	`PF00226`	DnaJ	Domain	9	72	1e-20	74.3	DnaJ domain
`XP_057788359.1`	Pfam	`PF14308`	DnaJ-X	Domain	138	316	9e-46	156.7	X-domain of DnaJ-containing
`XP_057788360.1`	Pfam	`PF00226`	DnaJ	Domain	9	72	1e-20	74.3	DnaJ domain
`XP_057788360.1`	Pfam	`PF14308`	DnaJ-X	Domain	138	316	9e-46	156.7	X-domain of DnaJ-containing
`XP_057788361.1`	Pfam	`PF00226`	DnaJ	Domain	9	72	1e-20	74.3	DnaJ domain
`XP_057788361.1`	Pfam	`PF14308`	DnaJ-X	Domain	138	316	9e-46	156.7	X-domain of DnaJ-containing
`XP_057788362.1`	Pfam	`PF00226`	DnaJ	Domain	9	72	9e-21	74.5	DnaJ domain
`XP_057788362.1`	Pfam	`PF14308`	DnaJ-X	Domain	138	317	6.7e-46	157.1	X-domain of DnaJ-containing
`XP_057788364.1`	Pfam	`PF00226`	DnaJ	Domain	12	51	4e-10	40.4	DnaJ domain
`XP_057788364.1`	Pfam	`PF14308`	DnaJ-X	Domain	117	295	8.7e-46	156.7	X-domain of DnaJ-containing
`XP_057788365.1`	Pfam	`PF00226`	DnaJ	Domain	4	44	1.1e-10	42.2	DnaJ domain
`XP_057788365.1`	Pfam	`PF14308`	DnaJ-X	Domain	110	288	8.2e-46	156.8	X-domain of DnaJ-containing
`XP_057788366.1`	Pfam	`PF00226`	DnaJ	Domain	12	51	3.5e-10	40.5	DnaJ domain
`XP_057788366.1`	Pfam	`PF14308`	DnaJ-X	Domain	117	296	6.4e-46	157.1	X-domain of DnaJ-containing
`XP_057788367.1`	Pfam	`PF00226`	DnaJ	Domain	4	44	9.8e-11	42.3	DnaJ domain
`XP_057788367.1`	Pfam	`PF14308`	DnaJ-X	Domain	110	289	6e-46	157.2	X-domain of DnaJ-containing

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057932384.1
AAAAAAAACACACACAAAAACTGTGTTTTTCCTTTTAAGTTGAAATTGAGATATTTATATATGTATATACATATCATGAAGTTGGTCGTTGGTTGTTACGCGGTAAGTCATATATATATATAAGTAATTTATTTCAACGGTCAGTCTTGAGGCACAGAAACAGCAGCCTAGATCATCGTCAAACGCCACGAAAAATCAGATCTTGATTCATCCAAAGAGTTTTACCTCAACAATCGAATTTCGAGGCCTCAAAATTCAAC...

XM_057932382.1
TTGGTTGTTACGCGGTAAGTCATATATATATATAAGTAATTTATTTCAACGGTCAGTCTTGAGGCACAGAAACAGCAGCCTAGATCATCGTCAAACGCCACGAAAAATCAGATCTTGATTCATCCAAAGAGTTTTACCTCAACAATCGAATTTCGAGGCCTCAAAATTCAACTGATTTTCTCCGTTTCAATGTCATACCTCGCAAGAAATGTACATCCTGATAAAGATCATGGAGATCCTGAAGCTGCAGCCCAAGATTT...

CDS

8 records

下载 CDS FASTA

LOC131005404
ATGTCATACCTCGCAAGAAATGTACATCCTGATAAAGATCATGGAGATCCTGAAGCTGCAGCCCAAGATTTCAATGCACTGGGAGAGGCTTATCAGATACTGAGCAACCCTGTGCAACGTGAAGCATATGATAGATGTGGGAAAGATGGAGTGATGAAGGACTCGATGGTTGAACCTACAGTTCTATTTGGGATGATGTTTGGGAATGAGATTTTTGAGAACTATGTCGGGCAGCTTAGATTGCTTTCATCACCGCCTCC...

Protein

8 records

下载 Protein FASTA

XP_057788359.1
MENMAVDKEYYEKLGVGVDASDAEISKAYYQKARNVHPDKDHGDPEAAAQDFNALGEAYQILSNPVQREAYDRCGKDGVMKDSMVEPTVLFGMMFGNEIFENYVGQLRLLSSPPPEFDPDIPPEVQKPKLEKIMKTMQEEREEKLIKLLIDRLEPYIKGQRDAFVESAKLESKRLCQAAFGKVLLHTIGYIYRRQAAKEIGKGKRYMKVPFLAEWVRDKRHTRNTQSAAAQAAIAYIHLREEWKKCNEEQVKNENTLKTA...

XP_057788360.1
MENMAVDKEYYEKLGVGVDASDAEISKAYYQKARNVHPDKDHGDPEAAAQDFNALGEAYQILSNPVQREAYDRCGKDGVMKDSMVEPTVLFGMMFGNEIFENYVGQLRLLSSPPPEFDPDIPPEVQKPKLEKIMKTMQEEREEKLIKLLIDRLEPYIKGQRDAFVESAKLESKRLCQAAFGKVLLHTIGYIYRRQAAKEIGKGKRYMKVPFLAEWVRDKRHTRNTQSAAAQAAIAYIHLREEWKKCNEEQVKNENTLKTA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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