Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005126`

染色体: Chr01 坐标: 69060113-69063730 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005126`
名称	SmilChr01G005126
描述	26S proteasome regulatory subunit S10B homolog B
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	69060113 - 69063730 / `-`

ID 对照

NCBI Gene ID	`LOC131005392`
GeneID	`131005392`
locus_tag	`-`
NCBI Name	`LOC131005392`
原始查询	`SmilChr01G005126`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit S10B homolog B
产物	26S proteasome regulatory subunit S10B homolog B
Arabidopsis	`AT1G45000` (AT1G45000) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841065] identity=92; qcov=1; evalue=0; confidence=high
Rice	`Os02g0199900` (OsRpt4a) - identity=89.9; qcov=0.995; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0016887 (ATP hydrolysis activity); GO:0030433 (GO:0030433); GO:0031597 (cytosolic proteasome complex); GO:0036402 (proteasome-activating activity); GO:0045899 (positive regulation of RNA polymerase II transcription preinitiation complex assembly)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF07728 (AAA_5); PF16450 (Prot_ATP_ID_OB_C); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131005392

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788340.1`
2	Nucleus	细胞核	0.80000	`XP_057788340.1`
3	Cytosol	细胞质基质	0.80000	`XP_057788340.1`
4	Chromosome	染色体	0.00000	`XP_057788340.1`
5	Centromere	着丝粒	0.00000	`XP_057788340.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:69060482`	`T`	`TTA`	2bp_insertion	frameshift_variant	56	A18,A2,A24,A5,A8,B10,B103,B107,B115,B117,B125,B126,B131,B139,B18,B2,B32,B40,B41,B45,B49,B50,B51,B56,B59,B71,B77,B78,B89,B90,B92,B94,B96,B97,C11,C12,C16,C17,C24,C26,C3,C31,C4,C47,C5,C59,C6,C60,C62,C69,C79,C83,C86,D11,D5,D7
`Chr1:69060483`	`C`	`CTA`	2bp_insertion	frameshift_variant	56	A18,A2,A24,A5,A8,B10,B103,B107,B115,B117,B125,B126,B131,B139,B18,B2,B32,B40,B41,B45,B49,B50,B51,B56,B59,B71,B77,B78,B89,B90,B92,B94,B96,B97,C11,C12,C16,C17,C24,C26,C3,C31,C4,C47,C5,C59,C6,C60,C62,C69,C79,C83,C86,D11,D5,D7
`Chr1:69060522`	`TTA`	`T`	2bp_deletion	frameshift_variant	83	A10,A2,A24,A5,A8,B1,B10,B101,B102,B103,B107,B111,B112,B115,B117,B12,B123,B126,B128,B131,B139,B14,B18,B2,B25,B3,B32,B40,B41,B45,B49,B5,B50,B51,B56,B57,B59,B61,B63,B65,B67,B7,B70,B71,B77,B78,B83,B86,B88,B9,B90,B92,B94,B96,B97,C10,C11,C12,C16,C17,C18,C24,C26,C3,C31,C4,C49,C5,C58,C59,C6,C60,C62,C69,C79,C82,C85,D10,D11,D4,D5,D7,D8
`Chr1:69060530`	`TAC`	`T`	2bp_deletion	frameshift_variant	22	A6,A8,B1,B101,B111,B112,B12,B128,B5,B61,B7,B70,B83,B88,B97,C10,C58,C59,C82,C85,D4,D8
`Chr1:69060556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:69060563`	`T`	`TA`	1bp_insertion	frameshift_variant	37	A19,A25,B102,B103,B104,B108,B122,B129,B14,B140,B17,B3,B31,B34,B38,B39,B54,B57,B61,B64,B67,B68,B77,B90,B92,B93,C17,C18,C23,C28,C3,C49,C5,C54,C61,C73,C84
`Chr1:69060564`	`AG`	`A`	1bp_deletion	frameshift_variant	38	A11,A15,A7,B109,B11,B112,B114,B119,B124,B133,B138,B16,B22,B29,B31,B34,B44,B48,B49,B65,B67,B69,B85,B95,C13,C14,C20,C24,C27,C30,C34,C53,C73,C74,C78,C80,C81,D2
`Chr1:69060635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B4,C2,C36
`Chr1:69060710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C36
`Chr1:69060836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B123,B65
`Chr1:69061113`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	C27
`Chr1:69061113`	`TCC`	`T`	2bp_deletion	CDS_variant	1	C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788340.1

418 aa

209

418

Prot_ATP_ID_OB_C

AAA_5

AAA

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 63-118 aa PF07728 AAA_5 175-296 aa PF00004 AAA 176-309 aa PF17862 AAA_lid_3 332-374 aa

XP_057788341.1

399 aa

200

399

Prot_ATP_ID_OB_C

AAA_5

AAA

AAA_lid_3

PF16450 Prot_ATP_ID_OB_C 63-118 aa PF07728 AAA_5 175-296 aa PF00004 AAA 176-309 aa PF17862 AAA_lid_3 332-374 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788340.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	63	118	1.2e-14	54.6	Proteasomal ATPase OB C-terminal domain
`XP_057788340.1`	Pfam	`PF07728`	AAA_5	Domain	175	296	2.7e-06	28.2	AAA domain (dynein-related subfamily)
`XP_057788340.1`	Pfam	`PF00004`	AAA	Domain	176	309	9.5e-44	149.7	ATPase family associated with various cellular activities (AAA)
`XP_057788340.1`	Pfam	`PF17862`	AAA_lid_3	Domain	332	374	1e-12	48.0	AAA+ lid domain
`XP_057788341.1`	Pfam	`PF16450`	Prot_ATP_ID_OB_C	Domain	63	118	1e-14	54.8	Proteasomal ATPase OB C-terminal domain
`XP_057788341.1`	Pfam	`PF07728`	AAA_5	Domain	175	296	2.2e-06	28.4	AAA domain (dynein-related subfamily)
`XP_057788341.1`	Pfam	`PF00004`	AAA	Domain	176	309	8.3e-44	149.9	ATPase family associated with various cellular activities (AAA)
`XP_057788341.1`	Pfam	`PF17862`	AAA_lid_3	Domain	332	374	9.1e-13	48.2	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932358.1
AGCCCAAATCCAACAATGTGCTCAGACTCCCAGACTACAAAATTGTCTCTTGCTTCGGTAGCAAGTTTGAATTGCATTTCTTCAGAAATTTTTGATACTACACAACCAAAAATCATTCGATTTTTTTTTTAATCGAAAGAGAATAAGAGAACACAATGAGCGGCGAGAACGACGATGCTACTCGCCGCAAGGTGGCCATCGCCGATTACCGGAAGAAGCTGCTGAGTCACAAGGAGCTCGATGTCCGAGTTCGATCTGCA...

XM_057932357.1
ACAATGTGCTCAGACTCCCAGACTACAAAATTGTCTCTTGCTTCGGTAGCAAGTTTGAATTGCATTTCTTCAGAAATTTTTGATACTACACAACCAAAAATCATTCGATTTTTTTTTTAATCGAAAGAGAATAAGAGAACACAATGAGCGGCGAGAACGACGATGCTACTCGCCGCAAGGTGGCCATCGCCGATTACCGGAAGAAGCTGCTGAGTCACAAGGAGCTCGATGTCCGAGTTCGATCTGCAAGAGATAATCTA...

CDS

2 records

下载 CDS FASTA

LOC131005392
ATGAGCGGCGAGAACGACGATGCTACTCGCCGCAAGGTGGCCATCGCCGATTACCGGAAGAAGCTGCTGAGTCACAAGGAGCTCGATGTCCGAGTTCGATCTGCAAGAGATAATCTAAGGGCTACAAAGAAGGAGTATACTAAAACAGAGGATGATCTAAAGTCACTTCAGAGTGTTGGACAGATAATCGGAGAAGTTCTGAGGCCCTTGGATAATGAACGCTTGATAGTTAAAGCCAGTAGTGGCCCAAGATATGTGGT...

Protein

2 records

下载 Protein FASTA

XP_057788340.1
MSGENDDATRRKVAIADYRKKLLSHKELDVRVRSARDNLRATKKEYTKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKDKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ...

XP_057788341.1
MSGENDDATRRKVAIADYRKKLLSHKELDVRVRSARDNLRATKKEYTKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKDKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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