当前解析结果
SmilChr01G005149| 统一新 Gene ID | SmilChr01G005149 |
|---|---|
| 名称 | SmilChr01G005149 |
| 描述 | ribosomal RNA small subunit methyltransferase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69266267 - 69267525 / - |
| NCBI Gene ID | LOC131005483 |
|---|---|
| GeneID | 131005483 |
| locus_tag | - |
| NCBI Name | LOC131005483 |
| 原始查询 | SmilChr01G005149 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ribosomal RNA small subunit methyltransferase-like |
| 产物 | ribosomal RNA small subunit methyltransferase-like |
| Arabidopsis | AT2G47420 (DIM1A)Ribosomal RNA adenine dimethylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819355] identity=69.9; qcov=1; evalue=2.2e-176; confidence=high |
| Rice | Os10g0183900- identity=71.8; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000179 (rRNA (adenine-N6,N6-)-dimethyltransferase activity); GO:0005759 (mitochondrial matrix); GO:0031167 (rRNA methylation) |
| KEGG | - |
| Pfam | PF00398 (RrnaAD); PF08241 (Methyltransf_11); PF13649 (Methyltransf_25) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005483 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788466.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057788466.1 |
| 3 | Nucleolus | 核仁 | 0.80000 | XP_057788466.1 |
| 4 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.60000 | XP_057788466.1 |
| 5 | Mitochondrion | 线粒体 | 0.20000 | XP_057788466.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69266625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C14,C5 |
Chr1:69266743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr1:69266784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B119 |
Chr1:69266917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:69267001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B137,C10,C17 |
Chr1:69267013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:69267085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B82 |
Chr1:69267091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B82 |
Chr1:69267151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B26,B29,B68 |
Chr1:69267163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B123,B50,B65,B93 |
Chr1:69267454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B50,B65,B93 |
Chr1:69267472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788466.1PF00398
RrnaAD 29-256 aa
PF13649
Methyltransf_25 59-127 aa
PF08241
Methyltransf_11 60-126 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788466.1 |
Pfam | PF00398 |
RrnaAD | Domain | 29 | 256 | 1.2e-65 | 222.0 | Ribosomal RNA adenine dimethylase |
XP_057788466.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 59 | 127 | 2.1e-08 | 35.5 | Methyltransferase domain |
XP_057788466.1 |
Pfam | PF08241 |
Methyltransf_11 | Domain | 60 | 126 | 4.8e-06 | 27.8 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。