当前解析结果
SmilChr01G005162| 统一新 Gene ID | SmilChr01G005162 |
|---|---|
| 名称 | SmilChr01G005162 |
| 描述 | zinc finger CCCH domain-containing protein 19 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69385861 - 69397275 / - |
| NCBI Gene ID | LOC131005495 |
|---|---|
| GeneID | 131005495 |
| locus_tag | - |
| NCBI Name | LOC131005495 |
| 原始查询 | SmilChr01G005162 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger CCCH domain-containing protein 19 |
| 产物 | zinc finger CCCH domain-containing protein 19 |
| Arabidopsis | AT2G16485 (NERD)GW repeat- and PHD finger-containing protein NERD [Source:NCBI gene (formerly Entrezgene);Acc:816147] identity=45.5; qcov=0.783; evalue=0; confidence=high |
| Rice | Os09g0530500- identity=50.5; qcov=0.219; evalue=1.21e-114; confidence=weak |
| GO | GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF02201 (SWIB); PF02213 (GYF); PF03126 (Plus-3); PF25980 (NERD_plant) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005495 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788482.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057788482.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057788482.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057788482.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057788482.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69386311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C56 |
Chr1:69386418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B63,C32,C68 |
Chr1:69386699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B28,C79 |
Chr1:69386789 |
ACC |
A |
2bp_deletion | frameshift_variant | 1 | B7 |
Chr1:69386789 |
ACC |
A |
2bp_deletion | CDS_variant | 1 | B7 |
Chr1:69386846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:69386966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C47 |
Chr1:69387001 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B112 |
Chr1:69387090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C14 |
Chr1:69387167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B18,C14 |
Chr1:69387205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:69387383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788482.1PF02201
SWIB 726-799 aa
PF03126
Plus-3 864-967 aa
PF25980
NERD_plant 990-1038 aa
PF02213
GYF 1202-1242 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788482.1 |
Pfam | PF02201 |
SWIB | Domain | 726 | 799 | 1.7e-14 | 54.0 | SWIB/MDM2 domain |
XP_057788482.1 |
Pfam | PF03126 |
Plus-3 | Domain | 864 | 967 | 2.2e-24 | 86.8 | Plus-3 domain |
XP_057788482.1 |
Pfam | PF25980 |
NERD_plant | Domain | 990 | 1038 | 1.5e-22 | 79.9 | Plant NERD domain |
XP_057788482.1 |
Pfam | PF02213 |
GYF | Domain | 1202 | 1242 | 6e-14 | 52.2 | GYF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。