当前解析结果
SmilChr01G005172| 统一新 Gene ID | SmilChr01G005172 |
|---|---|
| 名称 | SmilChr01G005172 |
| 描述 | type III polyketide synthase B-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69474746 - 69476712 / + |
| NCBI Gene ID | LOC131005505 |
|---|---|
| GeneID | 131005505 |
| locus_tag | - |
| NCBI Name | LOC131005505 |
| 原始查询 | SmilChr01G005172 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | type III polyketide synthase B-like |
| 产物 | type III polyketide synthase B-like |
| Arabidopsis | AT4G34850 (LAP5)Chalcone and stilbene synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829637] identity=75.3; qcov=0.995; evalue=0; confidence=high |
| Rice | Os07g0411300 (OsPKS2)- identity=68.7; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0030639 (polyketide biosynthetic process) |
| KEGG | - |
| Pfam | PF00195 (Chal_sti_synt_N); PF02797 (Chal_sti_synt_C); PF08545 (ACP_syn_III) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005505 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057788498.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057788498.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057788498.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788498.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788498.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69475144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,C82 |
Chr1:69475412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C52 |
Chr1:69475583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B4,B53,B81,C4 |
Chr1:69475679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C33 |
Chr1:69475743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr1:69475804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,C27,C42,C53 |
Chr1:69475805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B2,B63,C78 |
Chr1:69475835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr1:69476025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B103,D10 |
Chr1:69476066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B104,B2,B50 |
Chr1:69476070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr1:69476129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B24,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788498.1PF00195
Chal_sti_synt_N 14-225 aa
PF08545
ACP_syn_III 160-224 aa
PF02797
Chal_sti_synt_C 235-384 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788498.1 |
Pfam | PF00195 |
Chal_sti_synt_N | Domain | 14 | 225 | 1.3e-94 | 316.6 | Chalcone and stilbene synthases, N-terminal domain |
XP_057788498.1 |
Pfam | PF08545 |
ACP_syn_III | Domain | 160 | 224 | 4.4e-06 | 27.2 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
XP_057788498.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 235 | 384 | 4.2e-55 | 186.6 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。