当前解析结果
SmilChr01G005176| 统一新 Gene ID | SmilChr01G005176 |
|---|---|
| 名称 | SmilChr01G005176 |
| 描述 | uncharacterized SmilChr01G005176 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69503283 - 69504078 / + |
| NCBI Gene ID | LOC131005511 |
|---|---|
| GeneID | 131005511 |
| locus_tag | - |
| NCBI Name | LOC131005511 |
| 原始查询 | SmilChr01G005176 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816653]; symbol=AT2G21180; hit=AT2G21180; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816653]; symbol=AT2G21180; hit=AT2G21180; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G21180 (AT2G21180)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:816653] identity=51.9; qcov=0.963; evalue=8.46e-23; confidence=medium |
| Rice | Os03g0249700- identity=42.1; qcov=0.993; evalue=6.43e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005511 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057788503.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057788503.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057788503.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057788503.1 |
| 5 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057788503.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69503555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B129 |
Chr1:69503566 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr1:69503566 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B76 |
Chr1:69503713 |
G |
A |
EMS_canonical_SNV | stop_gained | 15 | A3,B100,B111,B117,C12,C28,C30,C37,C39,C4,C41,C42,C64,C77,C84 |
Chr1:69503725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,D3 |
Chr1:69503729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B70,C33,D4 |
Chr1:69503735 |
CG |
C |
1bp_deletion | frameshift_variant | 2 | B94,C16 |
Chr1:69503735 |
CG |
C |
1bp_deletion | CDS_variant | 2 | B94,C16 |
Chr1:69503771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B12 |
Chr1:69503772 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | A19,B137 |
Chr1:69503772 |
C |
CT |
1bp_insertion | CDS_variant | 2 | A19,B137 |
Chr1:69503796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B20 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。