当前解析结果
SmilChr01G005220| 统一新 Gene ID | SmilChr01G005220 |
|---|---|
| 名称 | SmilChr01G005220 |
| 描述 | uncharacterized SmilChr01G005220 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69765732 - 69767258 / - |
| NCBI Gene ID | LOC131012307 |
|---|---|
| GeneID | 131012307 |
| locus_tag | - |
| NCBI Name | LOC131012307 |
| 原始查询 | SmilChr01G005220 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SAUR-like auxin-responsive protein family [Source:NCBI gene (formerly Entrezgene);Acc:830039]; symbol=AT4G38840; hit=AT4G38840; species=arabidopsis; confidence=medium |
| 产物 | SAUR-like auxin-responsive protein family [Source:NCBI gene (formerly Entrezgene);Acc:830039]; symbol=AT4G38840; hit=AT4G38840; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G38840 (AT4G38840)SAUR-like auxin-responsive protein family [Source:NCBI gene (formerly Entrezgene);Acc:830039] identity=60.2; qcov=0.472; evalue=3.32e-32; confidence=medium |
| Rice | Os04g0537100 (OsSAUR19)- identity=52.9; qcov=0.442; evalue=3.98e-19; confidence=low |
| GO | GO:0009733 (response to auxin) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02519 (Auxin_inducible) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012307 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057796221.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057796221.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796221.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796221.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796221.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69765958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B93,C17,C33 |
Chr1:69765983 |
A |
AT |
1bp_insertion | frameshift_variant | 39 | A2,A3,B1,B114,B124,B128,B13,B130,B14,B20,B30,B33,B46,B53,B59,B69,B71,B77,B88,B97,C11,C13,C26,C29,C32,C36,C37,C42,C45,C53,C54,C63,C68,C71,C74,C84,C87,D5,D8 |
Chr1:69765988 |
CT |
C |
1bp_deletion | frameshift_variant | 39 | A2,A3,B1,B114,B124,B128,B13,B130,B14,B20,B30,B33,B46,B53,B59,B69,B71,B77,B88,B97,C11,C13,C26,C29,C32,C36,C37,C42,C45,C53,C54,C63,C68,C71,C74,C84,C87,D5,D8 |
Chr1:69766001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr1:69766133 |
T |
TG |
1bp_insertion | frameshift_variant | 83 | A10,A14,A18,A2,A22,A24,A25,A6,B106,B108,B11,B110,B113,B118,B120,B123,B124,B132,B137,B17,B18,B19,B24,B26,B3,B33,B37,B45,B47,B50,B51,B52,B54,B57,B6,B62,B67,B7,B70,B71,B73,B74,B75,B76,B77,B89,B95,C1,C10,C19,C20,C24,C27,C28,C30,C32,C34,C35,C40,C41,C46,C49,C5,C50,C51,C52,C53,C55,C56,C58,C62,C64,C66,C71,C76,C79,C8,C83,C84,C87,D4,D5,D9 |
Chr1:69767076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C17 |
Chr1:69767084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C65 |
Chr1:69767105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C65 |
Chr1:69767112 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B63,C15,C21 |
Chr1:69767112 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B63,C15,C21 |
Chr1:69767165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr1:69767175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A22,B63,C15,C17,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796221.1PF02519
Auxin_inducible 12-80 aa
PF02519
Auxin_inducible 116-195 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796221.1 |
Pfam | PF02519 |
Auxin_inducible | Domain | 12 | 80 | 9.2e-50 | 167.6 | Auxin responsive protein |
XP_057796221.1 |
Pfam | PF02519 |
Auxin_inducible | Domain | 116 | 195 | 9.2e-50 | 167.6 | Auxin responsive protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。