当前解析结果
SmilChr01G005317| 统一新 Gene ID | SmilChr01G005317 |
|---|---|
| 名称 | SmilChr01G005317 |
| 描述 | riboflavin biosynthesis protein PYRD, chloroplastic-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70412045 - 70428509 / - |
| NCBI Gene ID | LOC131005643 |
|---|---|
| GeneID | 131005643 |
| locus_tag | - |
| NCBI Name | LOC131005643 |
| 原始查询 | SmilChr01G005317 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | riboflavin biosynthesis protein PYRD, chloroplastic-like |
| 产物 | riboflavin biosynthesis protein PYRD%2C chloroplastic-like |
| Arabidopsis | AT4G20960 (PyrD)Cytidine/deoxycytidylate deaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827843] identity=52.9; qcov=1.05; evalue=2.05e-142; confidence=high |
| Rice | Os03g0117200- identity=50.3; qcov=0.929; evalue=8.31e-113; confidence=high |
| GO | GO:0008270 (zinc ion binding); GO:0008703 (5-amino-6-(5-phosphoribosylamino)uracil reductase activity); GO:0008835 (diaminohydroxyphosphoribosylaminopyrimidine deaminase activity); GO:0009231 (riboflavin biosynthetic process) |
| KEGG | smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00383 (dCMP_cyt_deam_1); PF01872 (RibD_C); PF14437 (MafB19-deam) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005643 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057788630.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057788630.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788630.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788630.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788630.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70412699 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B9 |
Chr1:70412699 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B9 |
Chr1:70412753 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B17,B70 |
Chr1:70412753 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B17,B70 |
Chr1:70412826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B112,B114 |
Chr1:70412844 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B14 |
Chr1:70412844 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B14 |
Chr1:70412997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr1:70413059 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:70413138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:70413466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:70413582 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788630.1PF14437
MafB19-deam 61-165 aa
PF00383
dCMP_cyt_deam_1 63-160 aa
PF01872
RibD_C 207-402 aa
XP_057788631.1PF14437
MafB19-deam 100-204 aa
PF00383
dCMP_cyt_deam_1 102-199 aa
PF01872
RibD_C 246-441 aa
XP_057788632.1PF14437
MafB19-deam 61-165 aa
PF00383
dCMP_cyt_deam_1 63-160 aa
PF01872
RibD_C 207-402 aa
XP_057788633.1PF14437
MafB19-deam 61-165 aa
PF00383
dCMP_cyt_deam_1 63-160 aa
PF01872
RibD_C 207-402 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788630.1 |
Pfam | PF14437 |
MafB19-deam | Family | 61 | 165 | 1.7e-08 | 35.2 | MafB19-like deaminase |
XP_057788630.1 |
Pfam | PF00383 |
dCMP_cyt_deam_1 | Domain | 63 | 160 | 1.7e-20 | 73.5 | Cytidine and deoxycytidylate deaminase zinc-binding region |
XP_057788630.1 |
Pfam | PF01872 |
RibD_C | Domain | 207 | 402 | 3.8e-09 | 37.3 | RibD C-terminal domain |
XP_057788631.1 |
Pfam | PF14437 |
MafB19-deam | Family | 100 | 204 | 2e-08 | 34.9 | MafB19-like deaminase |
XP_057788631.1 |
Pfam | PF00383 |
dCMP_cyt_deam_1 | Domain | 102 | 199 | 1.9e-20 | 73.3 | Cytidine and deoxycytidylate deaminase zinc-binding region |
XP_057788631.1 |
Pfam | PF01872 |
RibD_C | Domain | 246 | 441 | 4.9e-09 | 37.0 | RibD C-terminal domain |
XP_057788632.1 |
Pfam | PF14437 |
MafB19-deam | Family | 61 | 165 | 1.7e-08 | 35.2 | MafB19-like deaminase |
XP_057788632.1 |
Pfam | PF00383 |
dCMP_cyt_deam_1 | Domain | 63 | 160 | 1.7e-20 | 73.5 | Cytidine and deoxycytidylate deaminase zinc-binding region |
XP_057788632.1 |
Pfam | PF01872 |
RibD_C | Domain | 207 | 402 | 3.8e-09 | 37.3 | RibD C-terminal domain |
XP_057788633.1 |
Pfam | PF14437 |
MafB19-deam | Family | 61 | 165 | 1.7e-08 | 35.2 | MafB19-like deaminase |
XP_057788633.1 |
Pfam | PF00383 |
dCMP_cyt_deam_1 | Domain | 63 | 160 | 1.7e-20 | 73.5 | Cytidine and deoxycytidylate deaminase zinc-binding region |
XP_057788633.1 |
Pfam | PF01872 |
RibD_C | Domain | 207 | 402 | 3.8e-09 | 37.3 | RibD C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
9 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。