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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005323

染色体: Chr01 坐标: 70445586-70457056 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005323
名称SmilChr01G005323
描述uncharacterized SmilChr01G005323
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向70445586 - 70457056 / +

ID 对照

NCBI Gene IDLOC131005649
GeneID131005649
locus_tag-
NCBI NameLOC131005649
原始查询SmilChr01G005323

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Trimeric LpxA-like enzyme [Source:NCBI gene (formerly Entrezgene);Acc:818061]; symbol=AT2G34970; hit=AT2G34970; species=arabidopsis; confidence=high
产物Trimeric LpxA-like enzyme [Source:NCBI gene (formerly Entrezgene);Acc:818061]; symbol=AT2G34970; hit=AT2G34970; species=arabidopsis; confidence=high
ArabidopsisAT2G34970 (AT2G34970)
Trimeric LpxA-like enzyme [Source:NCBI gene (formerly Entrezgene);Acc:818061]
identity=61.6; qcov=1; evalue=0; confidence=high
RiceOs02g0812400
-
identity=58; qcov=0.978; evalue=0; confidence=high
GOGO:0003743 (translation initiation factor activity); GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0005851 (eukaryotic translation initiation factor 2B complex); GO:0009058 (biosynthetic process); GO:0031369 (translation initiation factor binding)
KEGG-
PfamPF00483 (NTP_transferase); PF02020 (W2); PF24894 (Hexapep_GlmU); PF25084 (LbH_EIF2B); PF25087 (GMPPB_C)
InterPro-
eggNOG-
NRGeneID:131005649

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057788641.1
2 Nucleus 细胞核 0.80000 XP_057788641.1
3 Cytosol 细胞质基质 0.60000 XP_057788641.1
4 Chromosome 染色体 0.00000 XP_057788641.1
5 Centromere 着丝粒 0.00000 XP_057788641.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:70446193 C T EMS_canonical_SNV CDS_variant 1 C41
Chr1:70446595 G A EMS_canonical_SNV CDS_variant 1 B85
Chr1:70447191 C T EMS_canonical_SNV CDS_variant 2 C15,C21
Chr1:70447247 G A EMS_canonical_SNV CDS_variant 3 B66,B90,B92
Chr1:70447274 G A EMS_canonical_SNV CDS_variant 1 C46
Chr1:70450507 C T EMS_canonical_SNV CDS_variant 2 C11,C69
Chr1:70450574 C T EMS_canonical_SNV CDS_variant 1 C41
Chr1:70452197 G A EMS_canonical_SNV CDS_variant 1 A8
Chr1:70454110 C T EMS_canonical_SNV CDS_variant 1 C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788641.1
721 aa
N
1
360
721
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 644-721 aa
XP_057788642.1
721 aa
N
1
360
721
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 644-721 aa
XP_057788643.1
721 aa
N
1
360
721
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 644-721 aa
XP_057788644.1
721 aa
N
1
360
721
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 644-721 aa
XP_057788645.1
721 aa
N
1
360
721
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 644-721 aa
XP_057788646.1
720 aa
N
1
360
720
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 643-720 aa
XP_057788647.1
720 aa
N
1
360
720
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 643-720 aa
XP_057788648.1
720 aa
N
1
360
720
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 643-720 aa
XP_057788649.1
720 aa
N
1
360
720
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 643-720 aa
XP_057788650.1
720 aa
N
1
360
720
NTP_transferase
LbH_EIF2B
GMPPB_C
Hexapep_GlmU
W2
C
PF00483 NTP_transferase 27-169 aa PF25084 LbH_EIF2B 321-425 aa PF25087 GMPPB_C 333-418 aa PF24894 Hexapep_GlmU 344-406 aa PF02020 W2 643-720 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788641.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788641.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788641.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.4 GMPPB C-terminal domain
XP_057788641.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788641.1 Pfam PF02020 W2 Repeat 644 721 1.2e-15 58.1 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788642.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788642.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788642.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.4 GMPPB C-terminal domain
XP_057788642.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788642.1 Pfam PF02020 W2 Repeat 644 721 1.2e-15 58.1 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788643.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788643.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788643.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.4 GMPPB C-terminal domain
XP_057788643.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788643.1 Pfam PF02020 W2 Repeat 644 721 1.2e-15 58.1 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788644.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788644.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788644.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.4 GMPPB C-terminal domain
XP_057788644.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788644.1 Pfam PF02020 W2 Repeat 644 721 1.2e-15 58.1 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788645.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788645.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788645.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.4 GMPPB C-terminal domain
XP_057788645.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788645.1 Pfam PF02020 W2 Repeat 644 721 1.2e-15 58.1 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788646.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788646.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788646.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.3 GMPPB C-terminal domain
XP_057788646.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788646.1 Pfam PF02020 W2 Repeat 643 720 1e-15 58.2 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788647.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788647.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788647.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.3 GMPPB C-terminal domain
XP_057788647.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788647.1 Pfam PF02020 W2 Repeat 643 720 1e-15 58.2 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788648.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788648.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788648.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.3 GMPPB C-terminal domain
XP_057788648.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788648.1 Pfam PF02020 W2 Repeat 643 720 1e-15 58.2 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788649.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788649.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788649.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.3 GMPPB C-terminal domain
XP_057788649.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788649.1 Pfam PF02020 W2 Repeat 643 720 1e-15 58.2 eIF4-gamma/eIF5/eIF2-epsilon
XP_057788650.1 Pfam PF00483 NTP_transferase Family 27 169 7e-11 42.9 Nucleotidyl transferase
XP_057788650.1 Pfam PF25084 LbH_EIF2B Repeat 321 425 9.1e-38 129.2 EIF2B subunit epsilon LbH domain
XP_057788650.1 Pfam PF25087 GMPPB_C Repeat 333 418 4.1e-11 43.3 GMPPB C-terminal domain
XP_057788650.1 Pfam PF24894 Hexapep_GlmU Repeat 344 406 6.1e-07 30.2 GlmU-like, C-terminal hexapeptide
XP_057788650.1 Pfam PF02020 W2 Repeat 643 720 1e-15 58.2 eIF4-gamma/eIF5/eIF2-epsilon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA
XM_057932662.1
TGTAGAGAGATAAATACTTTTTTTATTTTATTATATTTTTGTCAAATTCCAAAATTTCCATAAATAATTGTTAAATCAAATTGTTCTCTCTCTTCTCATTCTCGTGTCCCGCTTTCTGTCTCTGTCACTCTCTCGTCTCCGGCCTCCGTGCCGCCGCCCTCGCCGGCTTGCCCAACCCCTTCATCTCCGTCCTCGCCGACTCGCCCAGCCTTCCCCGTCGCCCGGCCTCCTCCTTGGACCAGCATAAGTTTGGTCGTTAA...
XM_057932664.1
ATTCCAAAATTTCCATAAATAATTGTTAAATCAAATTGTTCTCTCTCTTCTCATTCTCGTGTCCCGCTTTCTGTCTCTGTCACTCTCTCGTCTCCGGCCTCCGTGCCGCCGCCCTCGCCGGCTTGCCCAACCCCTTCATCTCCGTCCTCGCCGACTCGCCCAGCCTTCCCCGTCGCCCGGCCTCCTCCTTGGACGTAGCATAAGTTTGGTCGTTAAAGCGCAATGGTGGCGAAGAAAGGGAGCAGAGGAGGAACGGTAGG...

CDS

10 records

下载 CDS FASTA
LOC131005649
ATGGTGGCGAAGAAAGGGAGCAGAGGAGGAACGGTAGGCGAAGATGCGGAGGAGGAACTATCACGCGTCCCCCTGCAGGCCATTCTCTTGGCCGATAGCTTTGCTACACTCTTCCGCCCTATCACCCTCGAACGCCCTAAGGTATTGCTACCACTGGTCAATGCACCTATGATCGAATATACATTGGCGTGGCTCGAGGCTGCTGGAGTTGAGGAGGTTTTTGTGTTTTGTTGCGCTCATTCCAAGCAAGTGATTGACTA...
LOC131005649
ATGGTGGCGAAGAAAGGGAGCAGAGGAGGAACGGTAGGCGAAGATGCGGAGGAGGAACTATCACGCGTCCCCCTGCAGGCCATTCTCTTGGCCGATAGCTTTGCTACACTCTTCCGCCCTATCACCCTCGAACGCCCTAAGGTATTGCTACCACTGGTCAATGCACCTATGATCGAATATACATTGGCGTGGCTCGAGGCTGCTGGAGTTGAGGAGGTTTTTGTGTTTTGTTGCGCTCATTCCAAGCAAGTGATTGACTA...

Protein

10 records

下载 Protein FASTA
XP_057788641.1
MVAKKGSRGGTVGEDAEEELSRVPLQAILLADSFATLFRPITLERPKVLLPLVNAPMIEYTLAWLEAAGVEEVFVFCCAHSKQVIDYLENSNWLNQPNFSVATIESYNAMSAGDALRLIYERHVIRGDFILVTGDTVSNMPLTQVLKEHKDRRKKDSNAVMTMVIKQSKPSPITHQSRLGTEELFMAIDPETKELLYYEDKADTSKGTITLDKTMLLDRSSMSLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG...
XP_057788642.1
MVAKKGSRGGTVGEDAEEELSRVPLQAILLADSFATLFRPITLERPKVLLPLVNAPMIEYTLAWLEAAGVEEVFVFCCAHSKQVIDYLENSNWLNQPNFSVATIESYNAMSAGDALRLIYERHVIRGDFILVTGDTVSNMPLTQVLKEHKDRRKKDSNAVMTMVIKQSKPSPITHQSRLGTEELFMAIDPETKELLYYEDKADTSKGTITLDKTMLLDRSSMSLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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