Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005324`

染色体: Chr01 坐标: 70458768-70466254 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005324`
名称	SmilChr01G005324
描述	zinc finger CCCH domain-containing protein 41
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70458768 - 70466254 / `+`

ID 对照

NCBI Gene ID	`LOC131005652`
GeneID	`131005652`
locus_tag	`-`
NCBI Name	`LOC131005652`
原始查询	`SmilChr01G005324`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 41
产物	zinc finger CCCH domain-containing protein 41
Arabidopsis	`AT3G27700` (AT3G27700) zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:822392] identity=43.5; qcov=0.892; evalue=0; confidence=medium
Rice	`Os04g0394300` (OsC3H27) - identity=39.1; qcov=0.979; evalue=6.89e-168; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131005652

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788656.1`
2	Chromosome	染色体	0.00000	`XP_057788656.1`
3	Centromere	着丝粒	0.00000	`XP_057788656.1`
4	Chromatin	染色质	0.00000	`XP_057788656.1`
5	Telomere	端粒	0.00000	`XP_057788656.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70461296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,B44,C20
`Chr1:70461321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr1:70461531`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70461876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,D11,D6
`Chr1:70461912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C15,C21
`Chr1:70463195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C72,C77,D1
`Chr1:70463244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C46,D10
`Chr1:70463484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr1:70464554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:70465342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr1:70465555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70465579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C15,C21,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788656.1

965 aa

482

965

RRM_1

PF00076 RRM_1 467-530 aa

XP_057788657.1

965 aa

482

965

RRM_1

PF00076 RRM_1 467-530 aa

XP_057788658.1

965 aa

482

965

RRM_1

PF00076 RRM_1 467-530 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788656.1`	Pfam	`PF00076`	RRM_1	Domain	467	530	9.9e-12	45.3	RNA recognition motif
`XP_057788657.1`	Pfam	`PF00076`	RRM_1	Domain	467	530	9.9e-12	45.3	RNA recognition motif
`XP_057788658.1`	Pfam	`PF00076`	RRM_1	Domain	467	530	9.9e-12	45.3	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932673.1
TCAATTTAATTTTTACATTTTCCTAATCCAATCCCTTGTTTGTAAAACCCCCCATTTCAGCTTTTTATTCATCTCTCCTCCATTTTTTTTAGAGAGAGAAAACTGGGCAAATATTATACATCGAACAGACCACAGCTCCACACACAGATAGGCGCACACCAGGTGTTTGATTAAAAGAGGCGGAAATTTGGAGGGGGATTTTTGGGGCAGCTATTAATTGAATCGCCAAACCGATGGAATTGTATGCGTAGGCGATGCGT...

XM_057932674.1
AAACCCCCCATTTCAGCTTTTTATTCATCTCTCCTCCATTTTTTTTAGAGAGAGAAAACTGGGCAAATATTATACATCGAACAGACCACAGCTCCACACACAGATAGGCGCACACCAGGTGTTTGATTAAAAGAGGCGGAAATTTGGAGGGGGATTTTTGGGGCAGCTATTAATTGAATCGCCAAACCGATGGAATTGTATGCGTAGGCGATGCGTCTTTGCGAATTGAATAAATAAGGAATCAAAACCCTAGGCGAAGG...

CDS

3 records

下载 CDS FASTA

LOC131005652
ATGGAGCTGAAGGTTTCTCCAGAAAAACCGGGGTTTTCATCTTCTGATGTGGCCAGTGATACTGAGGAGAAAGAAATCAGTGAAGGCGAAGATGAAGACGATGATCGTAACCACAAGCATCGTAGGCGAGAGGCTCGTTCTCAATCTCAGGAGGGGGATTCTGTTGATAACCGTTTGACAAGACCATACAGAAAAAGGAATCGGCCTTTTGAAAATGGTTACTCTTACAGGGATGGTGACCCTCAATCAGGTGAACCCTG...

Protein

3 records

下载 Protein FASTA

XP_057788656.1
MELKVSPEKPGFSSSDVASDTEEKEISEGEDEDDDRNHKHRRREARSQSQEGDSVDNRLTRPYRKRNRPFENGYSYRDGDPQSGEPWRNYNMASDRDFPARFDKRRFNQGSFSKAPSDLNQRIRGNQILPGEVGFVRGRGREPVPWGIHDSRFGLVDVASQIVQPGPVPSAMFAGRGLSNVSSAHGTSWNAFGLVPGLPNGGLDSLHPLGLQGPLRPAINPPVNVGLPRQRCRDFEERGFCLRGDMCPMEHGVNRIVVED...

XP_057788657.1
MELKVSPEKPGFSSSDVASDTEEKEISEGEDEDDDRNHKHRRREARSQSQEGDSVDNRLTRPYRKRNRPFENGYSYRDGDPQSGEPWRNYNMASDRDFPARFDKRRFNQGSFSKAPSDLNQRIRGNQILPGEVGFVRGRGREPVPWGIHDSRFGLVDVASQIVQPGPVPSAMFAGRGLSNVSSAHGTSWNAFGLVPGLPNGGLDSLHPLGLQGPLRPAINPPVNVGLPRQRCRDFEERGFCLRGDMCPMEHGVNRIVVED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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