Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005329`

染色体: Chr01 坐标: 70493962-70497672 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005329`
名称	SmilChr01G005329
描述	ribonuclease III domain-containing protein RNC1, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70493962 - 70497672 / `-`

ID 对照

NCBI Gene ID	`LOC131005656`
GeneID	`131005656`
locus_tag	`-`
NCBI Name	`LOC131005656`
原始查询	`SmilChr01G005329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribonuclease III domain-containing protein RNC1, chloroplastic
产物	ribonuclease III domain-containing protein RNC1%2C chloroplastic
Arabidopsis	`AT4G37510` (AT4G37510) Ribonuclease III family protein [Source:NCBI gene (formerly Entrezgene);Acc:829906] identity=82.9; qcov=0.93; evalue=0; confidence=high
Rice	`Os01g0810100` (RNC1) - identity=81.7; qcov=0.902; evalue=0; confidence=high
GO	GO:0003725 (double-stranded RNA binding); GO:0004525 (ribonuclease III activity); GO:0005634 (nucleus); GO:0006364 (rRNA processing); GO:0010468 (regulation of gene expression)
KEGG	-
Pfam	PF00636 (Ribonuclease_3)
InterPro	-
eggNOG	-
NR	GeneID:131005656

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788661.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057788661.1`
3	Nucleus	细胞核	0.00000	`XP_057788661.1`
4	Chromosome	染色体	0.00000	`XP_057788661.1`
5	Centromere	着丝粒	0.00000	`XP_057788661.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70494114`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B15
`Chr1:70494114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:70494168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr1:70494196`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr1:70494301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:70494334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:70494388`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr1:70494507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:70494940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr1:70494966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B49,B78,C48
`Chr1:70495114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70495118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B33,C16,C80,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788661.1

528 aa

264

528

Ribonuclease_3

PF00636 Ribonuclease_3 185-272 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788661.1`	Pfam	`PF00636`	Ribonuclease_3	Family	185	272	1.4e-14	55.4	Ribonuclease III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932678.1
GCATCGTCGCTACTAATTTAGCATTCCGCATTTAATCTTTTCATAAAAATCCAATTGTGTCCCTTATCTCTGCAGCAGAAACCCTGCAAAAACCTCCTCAATCAATGGCTTCCCCAATCCACTACAATTTCTCGTAAAAAAATCCAATTCCATCACTCCAGAAATGGAGCTATATTCATCTTTCACACCGCACACCAAAATAGAACTCTCTTTCTCCTCCTCACTCTCTCCCTTTTCCTTCCAAACCCACTTCAAACTCC...

CDS

1 records

下载 CDS FASTA

LOC131005656
ATGGAGCTATATTCATCTTTCACACCGCACACCAAAATAGAACTCTCTTTCTCCTCCTCACTCTCTCCCTTTTCCTTCCAAACCCACTTCAAACTCCCCAAAACCCCATCAAATCTCCACATTTTAGCCGTCGCCTCCGCCGACCCGAAGGAGCTCCCTCAAAACAGCCCCCAACGCCTCCTGAAAGAGTTGGCGGAGCGCAAGAAAGTAGTCTCCCCCAAGAAAAAGGCGCCCCCTAAAAGATTCATCCTCAAACCGCC...

Protein

1 records

下载 Protein FASTA

XP_057788661.1
MELYSSFTPHTKIELSFSSSLSPFSFQTHFKLPKTPSNLHILAVASADPKELPQNSPQRLLKELAERKKVVSPKKKAPPKRFILKPPLDDKRLAERFLNSPQLSLKSFPLLSSCLPSQRLNNADRTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDSLLYMAFQHPHCERTNVRHVRSAHSRLSFLGQYVLELALCEFFLQRYPRESPGPMRERVYALIGKRFLPKWIKAASLQNLVFQYDDIDRLLRKDREPPVKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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