Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005341`

染色体: Chr01 坐标: 70628599-70630450 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005341`
名称	SmilChr01G005341
描述	pentatricopeptide repeat-containing protein At3g51320-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70628599 - 70630450 / `+`

ID 对照

NCBI Gene ID	`LOC131005668`
GeneID	`131005668`
locus_tag	`-`
NCBI Name	`LOC131005668`
原始查询	`SmilChr01G005341`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g51320-like
产物	pentatricopeptide repeat-containing protein At3g51320-like
Arabidopsis	`AT3G51320` (AT3G51320) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824295] identity=49.4; qcov=0.917; evalue=1.94e-170; confidence=high
Rice	`Os05g0107000` - identity=41.8; qcov=0.741; evalue=2.07e-102; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131005668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057788680.1`
2	Nucleus	细胞核	0.00000	`XP_057788680.1`
3	Chromosome	染色体	0.00000	`XP_057788680.1`
4	Centromere	着丝粒	0.00000	`XP_057788680.1`
5	Chromatin	染色质	0.00000	`XP_057788680.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70628769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:70629145`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C48
`Chr1:70629165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:70629241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr1:70629342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:70629840`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B97
`Chr1:70629840`	`TA`	`T`	1bp_deletion	CDS_variant	1	B97
`Chr1:70629844`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	A11,B33,B68,C48
`Chr1:70629844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B33,B68,C48
`Chr1:70629868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:70629891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:70629892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788680.1

545 aa

272

545

PPR

PPR_1

PPR_2

PPR

PPR_2

PPR

E_motif

PPR

PF01535 PPR 113-142 aa PF01535 PPR 186-211 aa PF12854 PPR_1 209-239 aa PF13041 PPR_2 212-244 aa PF01535 PPR 214-244 aa PF13041 PPR_2 242-290 aa PF01535 PPR 245-272 aa PF01535 PPR 318-344 aa PF01535 PPR 346-374 aa PF01535 PPR 393-419 aa PF20431 E_motif 475-532 aa PF01535 PPR 496-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	113	142	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	186	211	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF12854`	PPR_1	Repeat	209	239	4.9e-21	74.9	PPR repeat
`XP_057788680.1`	Pfam	`PF13041`	PPR_2	Repeat	212	244	2.1e-43	146.9	PPR repeat family
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	214	244	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF13041`	PPR_2	Repeat	242	290	2.1e-43	146.9	PPR repeat family
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	245	272	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	318	344	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	346	374	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	393	419	1.1e-48	160.8	PPR repeat
`XP_057788680.1`	Pfam	`PF20431`	E_motif	Repeat	475	532	2.4e-14	54.0	E motif
`XP_057788680.1`	Pfam	`PF01535`	PPR	Repeat	496	525	1.1e-48	160.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932697.1
TTTAGTCAAAACGTAACGTTAGACCTAATTTCCCCATTTTCCTTATGAAACGAGCTCCAAATGAACGCTGTTAATGGCGGAAACGAAGCAGAAGCCGATCCACCTCAATCCATCCGCATTCAATGAATGGCAAAACTTCTCCGTTTCAGAAACCTTCTCCTCTCTCACCCCTCCAAGCCATTCTCCTATGCATCCTTCTCTCCCTATTCAGAAATCAACGCTTCTCATTGCACAAACGGGAACCACAATTTGTCCGCCGC...

CDS

1 records

下载 CDS FASTA

LOC131005668
ATGGCAAAACTTCTCCGTTTCAGAAACCTTCTCCTCTCTCACCCCTCCAAGCCATTCTCCTATGCATCCTTCTCTCCCTATTCAGAAATCAACGCTTCTCATTGCACAAACGGGAACCACAATTTGTCCGCCGCCATCACAAGCAGAGCTCTTTACTTGCTCCAATGCTGCAAAACCTCATTCCATCTATTCCAACTCCAATCCCACTTGATAACTTCCGGGCTCTTCCGAGACCCCTCTTTCGCCGGCCGCCTCTTGAA...

Protein

1 records

下载 Protein FASTA

XP_057788680.1
MAKLLRFRNLLLSHPSKPFSYASFSPYSEINASHCTNGNHNLSAAITSRALYLLQCCKTSFHLFQLQSHLITSGLFRDPSFAGRLLKLSSALINDFCYTLLIFKRVESPDAFCVNTVIKKYSCSSYHAEAVVFYVEMLRGGVFYPNSFTFPPLISACAKLGCLSSGRMCHGHAVKLGVDSVLPVQNSLLHFYACCGVMDVAHKVFVEMLVRDLVSWNTMVDGFAKAGEMGLAHKLFDEMPEKNVVSWNVVITGYLNFRNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器