Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005342`

染色体: Chr01 坐标: 70630561-70641280 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005342`
名称	SmilChr01G005342
描述	endoribonuclease Dicer homolog 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70630561 - 70641280 / `-`

ID 对照

NCBI Gene ID	`LOC131005667`
GeneID	`131005667`
locus_tag	`-`
NCBI Name	`LOC131005667`
原始查询	`SmilChr01G005342`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	endoribonuclease Dicer homolog 2-like
产物	endoribonuclease Dicer homolog 2-like
Arabidopsis	`AT3G03300` (DCL2) dicer-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:821300] identity=51.1; qcov=0.999; evalue=0; confidence=high
Rice	`Os03g0583900` (OsDCL2a) - identity=42.8; qcov=1; evalue=0; confidence=medium
GO	GO:0003723 (RNA binding); GO:0004525 (ribonuclease III activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030422 (siRNA processing)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF00636 (Ribonuclease_3); PF02170 (PAZ); PF03368 (Dicer_dimer); PF04851 (ResIII); PF14622 (Ribonucleas_3_3)
InterPro	-
eggNOG	-
NR	GeneID:131005667

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788676.1`
2	Cytoplasm	细胞质	1.00000	`XP_057788679.1`
3	Cytosol	细胞质基质	1.00000	`XP_057788679.1`
4	Nucleoplasm	核质	0.20000	`XP_057788676.1`
5	Chromosome	染色体	0.00000	`XP_057788679.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70630854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B7
`Chr1:70630862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B7
`Chr1:70630879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,C3,C82
`Chr1:70630895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,B65,B76,C28
`Chr1:70630915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:70630926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr1:70630995`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	A21,A24,C61
`Chr1:70630995`	`C`	`CAT`	2bp_insertion	CDS_variant	3	A21,A24,C61
`Chr1:70630998`	`AG`	`A`	1bp_deletion	frameshift_variant	3	A21,A24,C61
`Chr1:70630998`	`AG`	`A`	1bp_deletion	CDS_variant	3	A21,A24,C61
`Chr1:70631318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:70631418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,C68,C80,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788676.1

1390 aa

695

1390

ResIII

DEAD

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

PF04851 ResIII 19-187 aa PF00270 DEAD 20-187 aa PF00271 Helicase_C 369-484 aa PF03368 Dicer_dimer 555-634 aa PF02170 PAZ 826-949 aa PF00636 Ribonuclease_3 992-1106 aa PF14622 Ribonucleas_3_3 1159-1294 aa PF00636 Ribonuclease_3 1182-1291 aa

XP_057788677.1

1390 aa

695

1390

ResIII

DEAD

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

XP_057788678.1

1390 aa

695

1390

ResIII

DEAD

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

XP_057788679.1

1148 aa

574

1148

Helicase_C

Dicer_dimer

PAZ

Ribonuclease_3

Ribonucleas_3_3

Ribonuclease_3

PF00271 Helicase_C 127-242 aa PF03368 Dicer_dimer 313-392 aa PF02170 PAZ 584-707 aa PF00636 Ribonuclease_3 750-864 aa PF14622 Ribonucleas_3_3 917-1052 aa PF00636 Ribonuclease_3 940-1049 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788676.1`	Pfam	`PF04851`	ResIII	Family	19	187	1.9e-14	54.6	Type III restriction enzyme, res subunit
`XP_057788676.1`	Pfam	`PF00270`	DEAD	Domain	20	187	3.8e-17	63.2	DEAD/DEAH box helicase
`XP_057788676.1`	Pfam	`PF00271`	Helicase_C	Domain	369	484	6.3e-16	59.3	Helicase conserved C-terminal domain
`XP_057788676.1`	Pfam	`PF03368`	Dicer_dimer	Domain	555	634	1.2e-15	58.0	Dicer dimerisation domain
`XP_057788676.1`	Pfam	`PF02170`	PAZ	Domain	826	949	4.9e-12	46.6	PAZ domain
`XP_057788676.1`	Pfam	`PF00636`	Ribonuclease_3	Family	992	1106	1.7e-41	141.8	Ribonuclease III domain
`XP_057788676.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1159	1294	1.7e-23	83.9	Ribonuclease-III-like
`XP_057788676.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1182	1291	1.7e-41	141.8	Ribonuclease III domain
`XP_057788677.1`	Pfam	`PF04851`	ResIII	Family	19	187	1.9e-14	54.6	Type III restriction enzyme, res subunit
`XP_057788677.1`	Pfam	`PF00270`	DEAD	Domain	20	187	3.8e-17	63.2	DEAD/DEAH box helicase
`XP_057788677.1`	Pfam	`PF00271`	Helicase_C	Domain	369	484	6.3e-16	59.3	Helicase conserved C-terminal domain
`XP_057788677.1`	Pfam	`PF03368`	Dicer_dimer	Domain	555	634	1.2e-15	58.0	Dicer dimerisation domain
`XP_057788677.1`	Pfam	`PF02170`	PAZ	Domain	826	949	4.9e-12	46.6	PAZ domain
`XP_057788677.1`	Pfam	`PF00636`	Ribonuclease_3	Family	992	1106	1.7e-41	141.8	Ribonuclease III domain
`XP_057788677.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1159	1294	1.7e-23	83.9	Ribonuclease-III-like
`XP_057788677.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1182	1291	1.7e-41	141.8	Ribonuclease III domain
`XP_057788678.1`	Pfam	`PF04851`	ResIII	Family	19	187	1.9e-14	54.6	Type III restriction enzyme, res subunit
`XP_057788678.1`	Pfam	`PF00270`	DEAD	Domain	20	187	3.8e-17	63.2	DEAD/DEAH box helicase
`XP_057788678.1`	Pfam	`PF00271`	Helicase_C	Domain	369	484	6.3e-16	59.3	Helicase conserved C-terminal domain
`XP_057788678.1`	Pfam	`PF03368`	Dicer_dimer	Domain	555	634	1.2e-15	58.0	Dicer dimerisation domain
`XP_057788678.1`	Pfam	`PF02170`	PAZ	Domain	826	949	4.9e-12	46.6	PAZ domain
`XP_057788678.1`	Pfam	`PF00636`	Ribonuclease_3	Family	992	1106	1.7e-41	141.8	Ribonuclease III domain
`XP_057788678.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	1159	1294	1.7e-23	83.9	Ribonuclease-III-like
`XP_057788678.1`	Pfam	`PF00636`	Ribonuclease_3	Family	1182	1291	1.7e-41	141.8	Ribonuclease III domain
`XP_057788679.1`	Pfam	`PF00271`	Helicase_C	Domain	127	242	6.2e-16	59.3	Helicase conserved C-terminal domain
`XP_057788679.1`	Pfam	`PF03368`	Dicer_dimer	Domain	313	392	8.1e-16	58.5	Dicer dimerisation domain
`XP_057788679.1`	Pfam	`PF02170`	PAZ	Domain	584	707	3.7e-12	47.0	PAZ domain
`XP_057788679.1`	Pfam	`PF00636`	Ribonuclease_3	Family	750	864	1e-41	142.5	Ribonuclease III domain
`XP_057788679.1`	Pfam	`PF14622`	Ribonucleas_3_3	Family	917	1052	8.3e-24	84.9	Ribonuclease-III-like
`XP_057788679.1`	Pfam	`PF00636`	Ribonuclease_3	Family	940	1049	1e-41	142.5	Ribonuclease III domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057932694.1
TTGCTGTGCCAACTCTCTCTCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTCTCTTGCCGCGCGAGGGGAGTACGTGTGATCATTGGTTTCAGTTTCATCCGAGGGAGGAGGAAGAGTGGGTTTGGCGCTAGCTTGATTCTTATTCTGTTATATAGTAAAGAAGGAACAGGATTTCATCCAAAAGTCTTCTGCCCTCGGGTGAACAAGTCTCCAAGAGAGCTCTTCCTGCGCCTGTTGAAATCCGCGAGAGAG...

XM_057932693.1
CTTCACATTCCTTCAACTCTCTCTCTCTCTCACACACACACACAACAGTCATTATCGTTTCAAATATATAGTCAGAATTTGGGCCCATACTTTTTCATCTTCTTTTGGACTGCAATCCTTCCTTCCTCTCGAAGTTTTGACTCTTCAGTTACATAAGTAATAGTCTGTTGTGGGGTTTATTTAGTGCGCCCGCCCGAACATTTTTCCGATCAAGTTTTTGCCTGTCTAGGTTTCAGTTTCATCCGAGGGAGGAGGAAGAG...

CDS

4 records

下载 CDS FASTA

LOC131005667
ATGATTATGGATGAAGGAGACCAAAAACTTATGGCAGATCCTCTCTCATTTGCCAGGAGTTATCAGTTGGAAGCACTAGAGATGGCTCTCAAAGATAATACAATTGTTTTCTTTGAGACGGGCACTGGGAAGACCCTAATTGCAATAATGCTTCTTCGCAGCTATTCTCACCTTCTGAGAAAGCCGGCACCTTATATTGCTGTGTTTTTGGTCCCTAAAGTTATCCTAGTTACTCAACAATCTGAAGTTGTGGCCCTACA...

Protein

4 records

下载 Protein FASTA

XP_057788676.1
MIMDEGDQKLMADPLSFARSYQLEALEMALKDNTIVFFETGTGKTLIAIMLLRSYSHLLRKPAPYIAVFLVPKVILVTQQSEVVALHTDLKVGKYYGEMGVNFWDEATWKREVNKYEVLVMTPQILLDALTRTFLRLDQIKVLIFDECHNARGKHQYACIMTEFYHRELASKSRQLPRVFGMTASPIKAKASSSAEAYWKQINELENLMHSKVFTCESDAILARYIPFSTPKLKEYSEKDNPMILETLEEDLQKLADKHV...

XP_057788677.1
MIMDEGDQKLMADPLSFARSYQLEALEMALKDNTIVFFETGTGKTLIAIMLLRSYSHLLRKPAPYIAVFLVPKVILVTQQSEVVALHTDLKVGKYYGEMGVNFWDEATWKREVNKYEVLVMTPQILLDALTRTFLRLDQIKVLIFDECHNARGKHQYACIMTEFYHRELASKSRQLPRVFGMTASPIKAKASSSAEAYWKQINELENLMHSKVFTCESDAILARYIPFSTPKLKEYSEKDNPMILETLEEDLQKLADKHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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