当前解析结果
SmilChr01G005360| 统一新 Gene ID | SmilChr01G005360 |
|---|---|
| 名称 | SmilChr01G005360 |
| 描述 | probable calcium-binding protein CML36 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70830391 - 70831054 / + |
| NCBI Gene ID | LOC131012531 |
|---|---|
| GeneID | 131012531 |
| locus_tag | - |
| NCBI Name | LOC131012531 |
| 原始查询 | SmilChr01G005360 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable calcium-binding protein CML36 |
| 产物 | probable calcium-binding protein CML36 |
| Arabidopsis | AT3G10190 (AT3G10190)Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:820181] identity=51; qcov=0.827; evalue=2.63e-48; confidence=medium |
| Rice | Os01g0949500 (OsCML10)- identity=37.9; qcov=0.914; evalue=6.82e-28; confidence=medium |
| GO | GO:0005509 (calcium ion binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012531 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057796501.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057796501.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057796501.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796501.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796501.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70830434 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:70830751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr1:70830893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B7 |
Chr1:70830924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:70830937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796501.1PF00036
EF-hand_1 61-88 aa
PF13405
EF-hand_6 61-90 aa
PF13499
EF-hand_7 61-121 aa
PF13202
EF-hand_5 62-85 aa
PF13833
EF-hand_8 62-86 aa
PF13833
EF-hand_8 74-120 aa
PF00036
EF-hand_1 98-122 aa
PF13202
EF-hand_5 99-120 aa
PF13833
EF-hand_8 133-159 aa
PF13405
EF-hand_6 134-163 aa
PF13202
EF-hand_5 135-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796501.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 61 | 88 | 1.2e-25 | 87.8 | EF hand domain |
XP_057796501.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 61 | 90 | 6.5e-23 | 78.9 | EF-hand domain |
XP_057796501.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 61 | 121 | 6.5e-27 | 94.4 | EF-hand domain pair |
XP_057796501.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 62 | 85 | 9.8e-21 | 72.9 | EF hand |
XP_057796501.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 62 | 86 | 1.2e-17 | 64.1 | EF-hand domain pair |
XP_057796501.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 74 | 120 | 1.2e-17 | 64.1 | EF-hand domain pair |
XP_057796501.1 |
Pfam | PF00036 |
EF-hand_1 | Domain | 98 | 122 | 1.2e-25 | 87.8 | EF hand domain |
XP_057796501.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 99 | 120 | 9.8e-21 | 72.9 | EF hand |
XP_057796501.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 133 | 159 | 1.2e-17 | 64.1 | EF-hand domain pair |
XP_057796501.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 134 | 163 | 6.5e-23 | 78.9 | EF-hand domain |
XP_057796501.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 135 | 155 | 9.8e-21 | 72.9 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。