当前解析结果
SmilChr01G005362| 统一新 Gene ID | SmilChr01G005362 |
|---|---|
| 名称 | SmilChr01G005362 |
| 描述 | 60S acidic ribosomal protein P0 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70858342 - 70861269 / - |
| NCBI Gene ID | LOC131005689 |
|---|---|
| GeneID | 131005689 |
| locus_tag | - |
| NCBI Name | LOC131005689 |
| 原始查询 | SmilChr01G005362 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 60S acidic ribosomal protein P0 |
| 产物 | 60S acidic ribosomal protein P0 |
| Arabidopsis | AT2G40010 (AT2G40010)Ribosomal protein L10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:818589] identity=80.4; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0130500 (YK704)60S acidic ribosomal protein P0-like [Source:NCBI gene (formerly Entrezgene);Acc:4344590] identity=78.2; qcov=1; evalue=8.01e-171; confidence=high |
| GO | GO:0000027 (ribosomal large subunit assembly); GO:0002181 (cytoplasmic translation); GO:0003735 (structural constituent of ribosome); GO:0022625 (cytosolic large ribosomal subunit); GO:0042254 (ribosome biogenesis); GO:0070180 (large ribosomal subunit rRNA binding) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00428 (Ribosomal_60s); PF00466 (Ribosomal_L10); PF17777 (RL10P_insert) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005689 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788703.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057788703.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057788703.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788703.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788703.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70858510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:70858865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B135,B52,C30,C57 |
Chr1:70858892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B5,B76,B79,C18 |
Chr1:70858913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B76,B79,C18 |
Chr1:70858943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:70858985 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:70859099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:70859178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr1:70860138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B103,B77 |
Chr1:70860149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr1:70860248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B126,B71,B78,C62 |
Chr1:70860293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788703.1PF00466
Ribosomal_L10 8-108 aa
PF17777
RL10P_insert 114-183 aa
PF00428
Ribosomal_60s 234-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788703.1 |
Pfam | PF00466 |
Ribosomal_L10 | Family | 8 | 108 | 3.7e-16 | 59.7 | Ribosomal protein L10 |
XP_057788703.1 |
Pfam | PF17777 |
RL10P_insert | Domain | 114 | 183 | 3.2e-22 | 78.9 | Insertion domain in 60S ribosomal protein L10P |
XP_057788703.1 |
Pfam | PF00428 |
Ribosomal_60s | Family | 234 | 320 | 3e-22 | 79.6 | 60s Acidic ribosomal protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。